Detailed information NTG0320278

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4I01_RS06990
• Genome accession: NZ_CP032909
• Coordinates: 1420306..1421361 (-)
• Length: 351 a.a.
• NCBI ID: WP_139543449.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 21-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1415306..1426361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I01_RS06965	-	1415845..1417257 (-)	1413	WP_139543446.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I01_RS06970	comB10	1417328..1418464 (-)	1137	WP_139543447.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I01_RS06975	comB9	1418457..1419437 (-)	981	WP_139543448.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I01_RS06980	comB8	1419437..1420180 (-)	744	WP_001208388.1	virB8 family protein	Machinery gene
D4I01_RS06985	comB7	1420177..1420290 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I01_RS06990	comB6	1420306..1421361 (-)	1056	WP_139543449.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I01_RS06995	-	1421369..1422364 (-)	996	WP_139543450.1	PDZ domain-containing protein	-
D4I01_RS07000	-	1422364..1422665 (-)	302	Protein_1326	YbaB/EbfC family nucleoid-associated protein	-
D4I01_RS07005	panD	1422668..1423021 (-)	354	WP_139543451.1	aspartate 1-decarboxylase	-
D4I01_RS07010	-	1423011..1425236 (-)	2226	WP_139543452.1	ATP-dependent Clp protease ATP-binding subunit	-
D4I01_RS07015	-	1425236..1425511 (-)	276	WP_139543591.1	ATP-dependent Clp protease adaptor ClpS	-
D4I01_RS07020	-	1425543..1425956 (-)	414	WP_139545873.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39752.71 Da
• Isoelectric Point: 9.0413

>NTDB_id=320278 D4I01_RS06990 WP_139543449.1 1420306..1421361(-) (comB6) [Helicobacter pylori strain 21-A-EK1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALTSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320278 D4I01_RS06990 WP_139543449.1 1420306..1421361(-) (comB6) [Helicobacter pylori strain 21-A-EK1]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTAGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAGGAACAGAATTTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTACGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACTAATTTGAGCACCAACCTCAGCCAAAACGCCCTTACTTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96