Detailed information NTG0320249

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4I31_RS01000
• Genome accession: NZ_CP032908
• Coordinates: 206262..207398 (+)
• Length: 378 a.a.
• NCBI ID: WP_139534054.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 23-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 201262..212398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I31_RS00965	panD	201707..202060 (+)	354	WP_139534051.1	aspartate 1-decarboxylase	-
D4I31_RS00970	-	202063..202356 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4I31_RS00975	-	202356..203351 (+)	996	WP_139535258.1	PDZ domain-containing protein	-
D4I31_RS00980	comB6	203359..204414 (+)	1056	WP_139535257.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I31_RS00985	comB7	204430..204543 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I31_RS00990	comB8	204540..205283 (+)	744	WP_139534052.1	virB8 family protein	Machinery gene
D4I31_RS00995	comB9	205283..206269 (+)	987	WP_139534053.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I31_RS01000	comB10	206262..207398 (+)	1137	WP_139534054.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I31_RS01005	-	207467..208879 (+)	1413	WP_139534055.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I31_RS01010	gmd	208909..210054 (+)	1146	WP_139534056.1	GDP-mannose 4,6-dehydratase	-
D4I31_RS01015	-	210047..210985 (+)	939	WP_139534057.1	GDP-L-fucose synthase	-
D4I31_RS08335	-	211362..211605 (-)	244	Protein_196	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42149.74 Da
• Isoelectric Point: 9.9021

>NTDB_id=320249 D4I31_RS01000 WP_139534054.1 206262..207398(+) (comB10) [Helicobacter pylori strain 23-A-EK1]
MNKWLKGVLVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQGPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320249 D4I31_RS01000 WP_139534054.1 206262..207398(+) (comB10) [Helicobacter pylori strain 23-A-EK1]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTGGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGTATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGTGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGTGGCATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.884	100	0.979