Detailed information NTG0320245

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4I31_RS00980
• Genome accession: NZ_CP032908
• Coordinates: 203359..204414 (+)
• Length: 351 a.a.
• NCBI ID: WP_139535257.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 23-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 198359..209414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I31_RS00950	-	198781..199194 (+)	414	WP_001023008.1	universal stress protein	-
D4I31_RS00955	-	199217..199492 (+)	276	WP_000784903.1	ATP-dependent Clp protease adaptor ClpS	-
D4I31_RS00960	-	199492..201717 (+)	2226	WP_139534050.1	ATP-dependent Clp protease ATP-binding subunit	-
D4I31_RS00965	panD	201707..202060 (+)	354	WP_139534051.1	aspartate 1-decarboxylase	-
D4I31_RS00970	-	202063..202356 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4I31_RS00975	-	202356..203351 (+)	996	WP_139535258.1	PDZ domain-containing protein	-
D4I31_RS00980	comB6	203359..204414 (+)	1056	WP_139535257.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I31_RS00985	comB7	204430..204543 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I31_RS00990	comB8	204540..205283 (+)	744	WP_139534052.1	virB8 family protein	Machinery gene
D4I31_RS00995	comB9	205283..206269 (+)	987	WP_139534053.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I31_RS01000	comB10	206262..207398 (+)	1137	WP_139534054.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I31_RS01005	-	207467..208879 (+)	1413	WP_139534055.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39805.79 Da
• Isoelectric Point: 8.8177

>NTDB_id=320245 D4I31_RS00980 WP_139535257.1 203359..204414(+) (comB6) [Helicobacter pylori strain 23-A-EK1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFTLFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVHFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320245 D4I31_RS00980 WP_139535257.1 203359..204414(+) (comB6) [Helicobacter pylori strain 23-A-EK1]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTACGCTGTTTAATTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGTGCTTTCTTTAGATTTTATCTTTAATCATGGCTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGTCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCATTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972