Detailed information NTG0320197

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4J22_RS07670
• Genome accession: NZ_CP032905
• Coordinates: 1547157..1548212 (-)
• Length: 351 a.a.
• NCBI ID: WP_139547578.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 26-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1542157..1553212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4J22_RS07645	-	1542684..1544096 (-)	1413	WP_139547575.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4J22_RS07650	comB10	1544167..1545303 (-)	1137	WP_139547576.1	DNA type IV secretion system protein ComB10	Machinery gene
D4J22_RS07655	comB9	1545296..1546288 (-)	993	WP_139547577.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4J22_RS07660	comB8	1546288..1547031 (-)	744	WP_108539514.1	virB8 family protein	Machinery gene
D4J22_RS07665	comB7	1547028..1547141 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4J22_RS07670	comB6	1547157..1548212 (-)	1056	WP_139547578.1	P-type conjugative transfer protein TrbL	Machinery gene
D4J22_RS07675	-	1548220..1549215 (-)	996	WP_139547670.1	PDZ domain-containing protein	-
D4J22_RS07680	-	1549215..1549508 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4J22_RS07685	panD	1549519..1549869 (-)	351	WP_108593697.1	aspartate 1-decarboxylase	-
D4J22_RS07690	-	1549859..1552084 (-)	2226	WP_139547579.1	ATP-dependent Clp protease ATP-binding subunit	-
D4J22_RS07695	-	1552084..1552359 (-)	276	WP_029647092.1	ATP-dependent Clp protease adaptor ClpS	-
D4J22_RS07700	-	1552390..1552803 (-)	414	WP_033587787.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39771.78 Da
• Isoelectric Point: 8.8177

>NTDB_id=320197 D4J22_RS07670 WP_139547578.1 1547157..1548212(-) (comB6) [Helicobacter pylori strain 26-A-EK1]
MKHDVYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320197 D4J22_RS07670 WP_139547578.1 1547157..1548212(-) (comB6) [Helicobacter pylori strain 26-A-EK1]
ATGAAACATGACGTTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGTCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTACTAG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATTA
CTACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969