Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D4K04_RS02740 Genome accession   NZ_CP032904
Coordinates   555984..556784 (+) Length   266 a.a.
NCBI ID   WP_139521676.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 550984..561784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS02705 pseH 551484..552026 (+) 543 WP_139521672.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  D4K04_RS02710 - 551959..552897 (-) 939 WP_139521673.1 tetraacyldisaccharide 4'-kinase -
  D4K04_RS02715 - 552894..553676 (-) 783 WP_139521674.1 NAD+ synthase -
  D4K04_RS02725 ilvC 553925..554917 (+) 993 WP_139521675.1 ketol-acid reductoisomerase -
  D4K04_RS02730 minD 554941..555747 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  D4K04_RS02735 minE 555744..555977 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  D4K04_RS02740 dprA 555984..556784 (+) 801 WP_139521676.1 DNA-processing protein DprA Machinery gene
  D4K04_RS02745 dprB 556781..557185 (+) 405 WP_139521677.1 Holliday junction resolvase RuvX Machinery gene
  D4K04_RS02755 - 557315..557665 (+) 351 WP_139521679.1 tetratricopeptide repeat protein -
  D4K04_RS02760 - 557852..558190 (+) 339 WP_000699897.1 hypothetical protein -
  D4K04_RS02765 - 558174..558734 (+) 561 WP_139521680.1 hypothetical protein -
  D4K04_RS02770 - 558791..559165 (+) 375 WP_001903550.1 lysozyme -
  D4K04_RS02775 - 559153..559419 (+) 267 Protein_526 lysozyme -
  D4K04_RS02785 - 559727..560113 (+) 387 WP_000393578.1 DUF1294 domain-containing protein -
  D4K04_RS02790 - 560113..560897 (+) 785 Protein_528 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29840.67 Da        Isoelectric Point: 7.3967

>NTDB_id=320172 D4K04_RS02740 WP_139521676.1 555984..556784(+) (dprA) [Helicobacter pylori strain 169-A-EK5]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMEDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=320172 D4K04_RS02740 WP_139521676.1 555984..556784(+) (dprA) [Helicobacter pylori strain 169-A-EK5]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTGGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTCATTATCCCCCAAGCGGATTTACAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGGAAGACGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41

Multiple sequence alignment