Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4K04_RS02745 Genome accession   NZ_CP032904
Coordinates   556781..557185 (+) Length   134 a.a.
NCBI ID   WP_139521677.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 551781..562185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS02710 - 551959..552897 (-) 939 WP_139521673.1 tetraacyldisaccharide 4'-kinase -
  D4K04_RS02715 - 552894..553676 (-) 783 WP_139521674.1 NAD+ synthase -
  D4K04_RS02725 ilvC 553925..554917 (+) 993 WP_139521675.1 ketol-acid reductoisomerase -
  D4K04_RS02730 minD 554941..555747 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  D4K04_RS02735 minE 555744..555977 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  D4K04_RS02740 dprA 555984..556784 (+) 801 WP_139521676.1 DNA-processing protein DprA Machinery gene
  D4K04_RS02745 dprB 556781..557185 (+) 405 WP_139521677.1 Holliday junction resolvase RuvX Machinery gene
  D4K04_RS02755 - 557315..557665 (+) 351 WP_139521679.1 tetratricopeptide repeat protein -
  D4K04_RS02760 - 557852..558190 (+) 339 WP_000699897.1 hypothetical protein -
  D4K04_RS02765 - 558174..558734 (+) 561 WP_139521680.1 hypothetical protein -
  D4K04_RS02770 - 558791..559165 (+) 375 WP_001903550.1 lysozyme -
  D4K04_RS02775 - 559153..559419 (+) 267 Protein_526 lysozyme -
  D4K04_RS02785 - 559727..560113 (+) 387 WP_000393578.1 DUF1294 domain-containing protein -
  D4K04_RS02790 - 560113..560897 (+) 785 Protein_528 hypothetical protein -
  D4K04_RS02795 - 560887..562011 (+) 1125 Protein_529 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15273.66 Da        Isoelectric Point: 8.4956

>NTDB_id=320173 D4K04_RS02745 WP_139521677.1 556781..557185(+) (dprB) [Helicobacter pylori strain 169-A-EK5]
MILACDVGLKRIGIAALLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILEHYYQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320173 D4K04_RS02745 WP_139521677.1 556781..557185(+) (dprB) [Helicobacter pylori strain 169-A-EK5]
GTGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCGCAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCACTATTATCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948

Multiple sequence alignment