Detailed information NTG0320169

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4K04_RS01335
• Genome accession: NZ_CP032904
• Coordinates: 264516..265652 (+)
• Length: 378 a.a.
• NCBI ID: WP_139521457.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 169-A-EK5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 259516..270652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K04_RS01300	panD	259940..260293 (+)	354	WP_033599840.1	aspartate 1-decarboxylase	-
D4K04_RS01305	-	260296..260598 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4K04_RS01310	-	260598..261593 (+)	996	WP_139522314.1	PDZ domain-containing protein	-
D4K04_RS01315	comB6	261601..262656 (+)	1056	WP_139521454.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K04_RS01320	comB7	262672..262785 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K04_RS01325	comB8	262782..263525 (+)	744	WP_108557395.1	virB8 family protein	Machinery gene
D4K04_RS01330	comB9	263525..264523 (+)	999	WP_139521456.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K04_RS01335	comB10	264516..265652 (+)	1137	WP_139521457.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K04_RS01340	-	265722..267134 (+)	1413	WP_139521459.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K04_RS01345	gmd	267175..268320 (+)	1146	WP_139521460.1	GDP-mannose 4,6-dehydratase	-
D4K04_RS01350	-	268313..269245 (+)	933	WP_139521462.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42260.93 Da
• Isoelectric Point: 9.9225

>NTDB_id=320169 D4K04_RS01335 WP_139521457.1 264516..265652(+) (comB10) [Helicobacter pylori strain 169-A-EK5]
MNKWLKGALVFVGGFATITTISLVYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPMDLKAKPTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320169 D4K04_RS01335 WP_139521457.1 264516..265652(+) (comB10) [Helicobacter pylori strain 169-A-EK5]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATGGATTTAAAAGC
AAAACCAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAATCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAGAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCCAGAGAAAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955