Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | D4K04_RS01320 | Genome accession | NZ_CP032904 |
| Coordinates | 262672..262785 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori strain 169-A-EK5 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 257672..267785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4K04_RS01295 | - | 257725..259950 (+) | 2226 | WP_139521452.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| D4K04_RS01300 | panD | 259940..260293 (+) | 354 | WP_033599840.1 | aspartate 1-decarboxylase | - |
| D4K04_RS01305 | - | 260296..260598 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| D4K04_RS01310 | - | 260598..261593 (+) | 996 | WP_139522314.1 | PDZ domain-containing protein | - |
| D4K04_RS01315 | comB6 | 261601..262656 (+) | 1056 | WP_139521454.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| D4K04_RS01320 | comB7 | 262672..262785 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| D4K04_RS01325 | comB8 | 262782..263525 (+) | 744 | WP_108557395.1 | virB8 family protein | Machinery gene |
| D4K04_RS01330 | comB9 | 263525..264523 (+) | 999 | WP_139521456.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| D4K04_RS01335 | comB10 | 264516..265652 (+) | 1137 | WP_139521457.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| D4K04_RS01340 | - | 265722..267134 (+) | 1413 | WP_139521459.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=320166 D4K04_RS01320 WP_001217873.1 262672..262785(+) (comB7) [Helicobacter pylori strain 169-A-EK5]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=320166 D4K04_RS01320 WP_001217873.1 262672..262785(+) (comB7) [Helicobacter pylori strain 169-A-EK5]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |