Detailed information NTG0320165

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4K04_RS01315
• Genome accession: NZ_CP032904
• Coordinates: 261601..262656 (+)
• Length: 351 a.a.
• NCBI ID: WP_139521454.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 169-A-EK5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 256601..267656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K04_RS01285	-	257022..257435 (+)	414	WP_001023005.1	universal stress protein	-
D4K04_RS01290	-	257450..257725 (+)	276	WP_042636791.1	ATP-dependent Clp protease adaptor ClpS	-
D4K04_RS01295	-	257725..259950 (+)	2226	WP_139521452.1	ATP-dependent Clp protease ATP-binding subunit	-
D4K04_RS01300	panD	259940..260293 (+)	354	WP_033599840.1	aspartate 1-decarboxylase	-
D4K04_RS01305	-	260296..260598 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4K04_RS01310	-	260598..261593 (+)	996	WP_139522314.1	PDZ domain-containing protein	-
D4K04_RS01315	comB6	261601..262656 (+)	1056	WP_139521454.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K04_RS01320	comB7	262672..262785 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K04_RS01325	comB8	262782..263525 (+)	744	WP_108557395.1	virB8 family protein	Machinery gene
D4K04_RS01330	comB9	263525..264523 (+)	999	WP_139521456.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K04_RS01335	comB10	264516..265652 (+)	1137	WP_139521457.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K04_RS01340	-	265722..267134 (+)	1413	WP_139521459.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39861.87 Da
• Isoelectric Point: 8.5806

>NTDB_id=320165 D4K04_RS01315 WP_139521454.1 261601..262656(+) (comB6) [Helicobacter pylori strain 169-A-EK5]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIISVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320165 D4K04_RS01315 WP_139521454.1 261601..262656(+) (comB6) [Helicobacter pylori strain 169-A-EK5]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAATTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAAGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCTTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.575	100	0.986