Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   TMZ1T_RS15845 Genome accession   NC_011662
Coordinates   3603927..3605318 (-) Length   463 a.a.
NCBI ID   WP_004299651.1    Uniprot ID   -
Organism   Thauera aminoaromatica     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598927..3610318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMZ1T_RS15825 (Tmz1t_3284) - 3599380..3600807 (-) 1428 WP_012585901.1 DUF1302 family protein -
  TMZ1T_RS15830 (Tmz1t_3285) - 3600819..3601568 (-) 750 WP_004299645.1 ABC transporter ATP-binding protein -
  TMZ1T_RS15835 (Tmz1t_3286) - 3601612..3602415 (+) 804 WP_004299647.1 outer membrane lipoprotein-sorting protein -
  TMZ1T_RS15840 (Tmz1t_3287) - 3602440..3603849 (-) 1410 WP_004299649.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  TMZ1T_RS15845 (Tmz1t_3288) pilR 3603927..3605318 (-) 1392 WP_004299651.1 sigma-54 dependent transcriptional regulator Regulator
  TMZ1T_RS15850 (Tmz1t_3289) - 3605315..3606910 (-) 1596 WP_012585902.1 nitrogen regulation protein NR(II) -
  TMZ1T_RS15855 (Tmz1t_3290) - 3606888..3607133 (-) 246 WP_004299655.1 PP0621 family protein -
  TMZ1T_RS15860 (Tmz1t_3291) - 3607271..3608428 (+) 1158 WP_012585903.1 pyridoxal phosphate-dependent aminotransferase -
  TMZ1T_RS15865 (Tmz1t_3292) mtnA 3608462..3609532 (+) 1071 WP_012585904.1 S-methyl-5-thioribose-1-phosphate isomerase -
  TMZ1T_RS15870 (Tmz1t_3293) - 3609529..3610218 (+) 690 WP_004299660.1 class II aldolase/adducin family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50077.32 Da        Isoelectric Point: 6.2036

>NTDB_id=32016 TMZ1T_RS15845 WP_004299651.1 3603927..3605318(-) (pilR) [Thauera aminoaromatica]
MTQVDRRNRPRAADVLVVDDEDDIRELLELSLMRMGLACDTAGSVGAARALLAERSYRLCLTDMRLPDGDGLELVEYIQT
LRPGLPVAVITAFGSIETAIRALKLGAFDFVTKPVELKALRELVQHALKLHAVEPVEHGAASAERSLIGHSAAFVQLRAQ
AGKLARNQAPVFIHGESGTGKEVIARYIHALGARAAGPFVPVNCGAISPELMESEFFGHRKGSFTGATADKSGLFQAAGG
GTLFLDEIGELPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHQDLGRLVAEGRFRQDLFFRINVITLRVPPLRE
RREDIPDLAAHILARLAVREGGAPRRLSAAALEALQAYAFPGNVRELENLLERACALCEGEEIGAGDLGVEDDCGALAAP
GGGENGASPATEAEVAGEGRDEVERLRIIRALEQTRWNRSAAARNLGMTLRQLRYRLQKWGMD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=32016 TMZ1T_RS15845 WP_004299651.1 3603927..3605318(-) (pilR) [Thauera aminoaromatica]
ATGACCCAGGTCGACCGCCGCAACCGGCCCCGTGCCGCCGACGTCCTCGTCGTCGATGACGAGGACGACATCCGGGAACT
GCTCGAGCTCTCGCTGATGCGCATGGGACTGGCCTGCGACACGGCGGGCTCGGTGGGCGCGGCGCGTGCGCTGCTGGCCG
AGCGCAGCTACCGGCTGTGCCTGACCGACATGCGCCTGCCCGACGGCGACGGGCTGGAGCTGGTCGAGTACATCCAGACG
CTGCGGCCGGGCCTGCCGGTGGCGGTGATCACCGCCTTCGGCAGCATCGAGACCGCGATCCGCGCGCTCAAGCTGGGTGC
CTTCGACTTCGTCACCAAGCCGGTCGAGCTCAAGGCCTTGCGCGAACTCGTGCAGCACGCGCTCAAGCTGCACGCGGTGG
AGCCGGTCGAGCATGGTGCGGCGTCGGCGGAGCGCAGCCTGATCGGCCACTCGGCGGCCTTCGTGCAGCTGCGCGCCCAG
GCCGGGAAGCTTGCGCGCAACCAGGCGCCGGTGTTCATCCATGGTGAGTCCGGGACCGGCAAGGAGGTGATTGCGCGCTA
CATCCACGCGCTCGGTGCGCGCGCCGCCGGCCCCTTCGTGCCGGTCAACTGCGGGGCGATCTCGCCCGAGCTGATGGAGA
GCGAGTTCTTCGGTCATCGCAAGGGCAGCTTCACTGGCGCCACCGCGGACAAGAGCGGGCTGTTTCAGGCCGCGGGCGGC
GGCACCCTGTTCCTCGACGAGATCGGCGAACTGCCGTTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGCGC
GGTGCGCCCGGTGGGTGCGCATGCCGAGGAGCCGGTGGATGTGCGCATCCTCTCCGCGTCGCACCAGGATCTCGGCCGCC
TGGTGGCCGAGGGGCGCTTCCGCCAGGACCTGTTCTTCCGCATCAACGTGATCACCTTGCGCGTGCCGCCGTTGCGCGAG
CGCCGCGAGGACATCCCCGACCTGGCCGCCCACATCCTCGCCCGCCTCGCCGTGCGCGAGGGTGGGGCGCCGCGCCGGCT
TTCCGCGGCGGCGCTCGAGGCGCTGCAGGCCTACGCTTTCCCCGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAGCGCG
CCTGTGCGCTGTGCGAGGGTGAGGAGATCGGTGCCGGCGACCTCGGGGTGGAGGACGATTGCGGCGCGCTCGCGGCGCCG
GGGGGGGGCGAGAATGGTGCATCGCCGGCGACCGAGGCCGAAGTGGCCGGCGAGGGCCGGGATGAGGTCGAGCGCCTGCG
CATCATCCGCGCGCTCGAGCAGACGCGCTGGAACCGGTCGGCGGCCGCGCGCAACCTCGGCATGACCTTGCGTCAGCTGC
GCTACCGTTTGCAGAAGTGGGGAATGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-124)

Sigma-54 interaction domain (Sigma54_activat)

(147-313)

Bacterial regulatory protein, Fis family (HTH_8)

(421-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.491

96.76

0.585
  pilR Acinetobacter baumannii strain A118

49.673

99.136

0.492

Multiple sequence alignment