Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D4K40_RS05950 Genome accession   NZ_CP032902
Coordinates   1202391..1203191 (-) Length   266 a.a.
NCBI ID   WP_139520959.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1197391..1208191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS05900 - 1197746..1198081 (-) 336 WP_001862999.1 hypothetical protein -
  D4K40_RS05905 - 1198071..1198856 (-) 786 WP_139520956.1 hypothetical protein -
  D4K40_RS05910 - 1198856..1199177 (-) 322 Protein_1125 DUF1294 domain-containing protein -
  D4K40_RS05920 - 1199539..1199805 (-) 267 WP_001883605.1 hypothetical protein -
  D4K40_RS05925 - 1199793..1200194 (-) 402 WP_000599139.1 hypothetical protein -
  D4K40_RS05930 - 1200224..1200790 (-) 567 WP_139520957.1 hypothetical protein -
  D4K40_RS05935 - 1200774..1201079 (-) 306 WP_000699933.1 hypothetical protein -
  D4K40_RS05940 - 1201206..1201592 (-) 387 WP_236637775.1 tetratricopeptide repeat protein -
  D4K40_RS08320 - 1201564..1201752 (-) 189 WP_236637776.1 hypothetical protein -
  D4K40_RS05945 dprB 1201990..1202394 (-) 405 WP_139520958.1 Holliday junction resolvase RuvX Machinery gene
  D4K40_RS05950 dprA 1202391..1203191 (-) 801 WP_139520959.1 DNA-processing protein DprA Machinery gene
  D4K40_RS05955 minE 1203198..1203431 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4K40_RS05960 minD 1203428..1204234 (-) 807 WP_139518693.1 septum site-determining protein MinD -
  D4K40_RS05965 ilvC 1204253..1205245 (-) 993 WP_139520960.1 ketol-acid reductoisomerase -
  D4K40_RS05975 - 1205494..1206276 (+) 783 WP_139520961.1 NAD+ synthase -
  D4K40_RS05980 - 1206273..1207211 (+) 939 WP_139520962.1 tetraacyldisaccharide 4'-kinase -
  D4K40_RS05985 pseH 1207144..1207686 (-) 543 WP_139520963.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29815.74 Da        Isoelectric Point: 8.5819

>NTDB_id=320125 D4K40_RS05950 WP_139520959.1 1202391..1203191(-) (dprA) [Helicobacter pylori strain 280-A-EK1]
MKSNFQYSTLENIPKAFGILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPTTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDVVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=320125 D4K40_RS05950 WP_139520959.1 1202391..1203191(-) (dprA) [Helicobacter pylori strain 280-A-EK1]
ATGAAAAGTAATTTCCAATACAGCACGCTAGAAAATATCCCTAAAGCCTTTGGCATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATTATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGTGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAACAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATTTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCATTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGTAGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGTAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTACCCCAACGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCGAGCTACGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATATTGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.744

100

0.977
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41

Multiple sequence alignment