Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4K40_RS05945 Genome accession   NZ_CP032902
Coordinates   1201990..1202394 (-) Length   134 a.a.
NCBI ID   WP_139520958.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1196990..1207394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS05900 - 1197746..1198081 (-) 336 WP_001862999.1 hypothetical protein -
  D4K40_RS05905 - 1198071..1198856 (-) 786 WP_139520956.1 hypothetical protein -
  D4K40_RS05910 - 1198856..1199177 (-) 322 Protein_1125 DUF1294 domain-containing protein -
  D4K40_RS05920 - 1199539..1199805 (-) 267 WP_001883605.1 hypothetical protein -
  D4K40_RS05925 - 1199793..1200194 (-) 402 WP_000599139.1 hypothetical protein -
  D4K40_RS05930 - 1200224..1200790 (-) 567 WP_139520957.1 hypothetical protein -
  D4K40_RS05935 - 1200774..1201079 (-) 306 WP_000699933.1 hypothetical protein -
  D4K40_RS05940 - 1201206..1201592 (-) 387 WP_236637775.1 tetratricopeptide repeat protein -
  D4K40_RS08320 - 1201564..1201752 (-) 189 WP_236637776.1 hypothetical protein -
  D4K40_RS05945 dprB 1201990..1202394 (-) 405 WP_139520958.1 Holliday junction resolvase RuvX Machinery gene
  D4K40_RS05950 dprA 1202391..1203191 (-) 801 WP_139520959.1 DNA-processing protein DprA Machinery gene
  D4K40_RS05955 minE 1203198..1203431 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4K40_RS05960 minD 1203428..1204234 (-) 807 WP_139518693.1 septum site-determining protein MinD -
  D4K40_RS05965 ilvC 1204253..1205245 (-) 993 WP_139520960.1 ketol-acid reductoisomerase -
  D4K40_RS05975 - 1205494..1206276 (+) 783 WP_139520961.1 NAD+ synthase -
  D4K40_RS05980 - 1206273..1207211 (+) 939 WP_139520962.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15147.61 Da        Isoelectric Point: 8.7185

>NTDB_id=320124 D4K40_RS05945 WP_139520958.1 1201990..1202394(-) (dprB) [Helicobacter pylori strain 280-A-EK1]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILEHYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320124 D4K40_RS05945 WP_139520958.1 1201990..1202394(-) (dprB) [Helicobacter pylori strain 280-A-EK1]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCAGATACGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
TGCTATCAAAGACGGCCGGTTAGACTCTTTGAGTGCTTGCAGGATCTTAGAGCACTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment