Detailed information NTG0320085

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4K94_RS07570
• Genome accession: NZ_CP032900
• Coordinates: 1537649..1538785 (-)
• Length: 378 a.a.
• NCBI ID: WP_139546584.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 476-A-EK5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1532649..1543785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K94_RS08275	-	1533596..1533736 (+)	141	WP_201737525.1	hypothetical protein	-
D4K94_RS07555	-	1534060..1534998 (-)	939	WP_139546581.1	GDP-L-fucose synthase	-
D4K94_RS07560	gmd	1534991..1536136 (-)	1146	WP_139546582.1	GDP-mannose 4,6-dehydratase	-
D4K94_RS07565	-	1536161..1537579 (-)	1419	WP_139546583.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K94_RS07570	comB10	1537649..1538785 (-)	1137	WP_139546584.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K94_RS07575	comB9	1538778..1539761 (-)	984	WP_139546585.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K94_RS07580	comB8	1539761..1540498 (-)	738	WP_108297487.1	virB8 family protein	Machinery gene
D4K94_RS07585	comB7	1540495..1540608 (-)	114	WP_139546586.1	comB7 lipoprotein	Machinery gene
D4K94_RS07590	comB6	1540624..1541679 (-)	1056	WP_139546619.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K94_RS07595	-	1541687..1542682 (-)	996	WP_139546620.1	PDZ domain-containing protein	-
D4K94_RS07600	-	1542682..1542975 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4K94_RS07605	panD	1542978..1543331 (-)	354	WP_139542481.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42203.81 Da
• Isoelectric Point: 9.9637

>NTDB_id=320085 D4K94_RS07570 WP_139546584.1 1537649..1538785(-) (comB10) [Helicobacter pylori strain 476-A-EK5]
MNKWLKGVLIFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKSVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320085 D4K94_RS07570 WP_139546584.1 1537649..1538785(-) (comB10) [Helicobacter pylori strain 476-A-EK5]
ATGAATAAGTGGCTTAAGGGGGTGCTTATTTTTATAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAATCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GTATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	98.677	100	0.987