Detailed information NTG0320089

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4K94_RS07590
• Genome accession: NZ_CP032900
• Coordinates: 1540624..1541679 (-)
• Length: 351 a.a.
• NCBI ID: WP_139546619.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 476-A-EK5
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1535624..1546679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K94_RS07565	-	1536161..1537579 (-)	1419	WP_139546583.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K94_RS07570	comB10	1537649..1538785 (-)	1137	WP_139546584.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K94_RS07575	comB9	1538778..1539761 (-)	984	WP_139546585.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K94_RS07580	comB8	1539761..1540498 (-)	738	WP_108297487.1	virB8 family protein	Machinery gene
D4K94_RS07585	comB7	1540495..1540608 (-)	114	WP_139546586.1	comB7 lipoprotein	Machinery gene
D4K94_RS07590	comB6	1540624..1541679 (-)	1056	WP_139546619.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K94_RS07595	-	1541687..1542682 (-)	996	WP_139546620.1	PDZ domain-containing protein	-
D4K94_RS07600	-	1542682..1542975 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4K94_RS07605	panD	1542978..1543331 (-)	354	WP_139542481.1	aspartate 1-decarboxylase	-
D4K94_RS07610	-	1543321..1545546 (-)	2226	WP_139546587.1	ATP-dependent Clp protease ATP-binding subunit	-
D4K94_RS07615	-	1545546..1545821 (-)	276	WP_000784906.1	ATP-dependent Clp protease adaptor ClpS	-
D4K94_RS07620	-	1545852..1546265 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39822.80 Da
• Isoelectric Point: 9.0419

>NTDB_id=320089 D4K94_RS07590 WP_139546619.1 1540624..1541679(-) (comB6) [Helicobacter pylori strain 476-A-EK5]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALINAHMQEKQDLSLLL
VVALFLCCVFVMGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320089 D4K94_RS07590 WP_139546619.1 1540624..1541679(-) (comB6) [Helicobacter pylori strain 476-A-EK5]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGAAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAATTAT
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATCAACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTTATGGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAG

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96