Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FDQ49_RS14330 Genome accession   NZ_CP040105
Coordinates   3028872..3030893 (+) Length   673 a.a.
NCBI ID   WP_004707569.1    Uniprot ID   A0AA36K9Y9
Organism   Acinetobacter nosocomialis M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3023872..3035893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS14305 (FDQ49_14305) - 3024203..3024613 (+) 411 WP_022575286.1 GFA family protein -
  FDQ49_RS14310 (FDQ49_14310) - 3024666..3025901 (-) 1236 WP_019457670.1 pyridoxal phosphate-dependent aminotransferase -
  FDQ49_RS14315 (FDQ49_14315) - 3026110..3026289 (+) 180 WP_000139632.1 hypothetical protein -
  FDQ49_RS14320 (FDQ49_14320) - 3026320..3027756 (-) 1437 WP_022575287.1 sensor domain-containing diguanylate cyclase -
  FDQ49_RS14325 (FDQ49_14325) - 3027901..3028692 (-) 792 WP_002052788.1 A1S_2505 family phage non-structural protein -
  FDQ49_RS14330 (FDQ49_14330) uvrB 3028872..3030893 (+) 2022 WP_004707569.1 excinuclease ABC subunit UvrB Machinery gene
  FDQ49_RS14335 (FDQ49_14335) - 3030988..3031575 (+) 588 WP_002052730.1 lipocalin family protein -
  FDQ49_RS14340 (FDQ49_14340) rarD 3031684..3032631 (+) 948 WP_079376984.1 EamA family transporter RarD -
  FDQ49_RS14345 (FDQ49_14345) - 3032848..3034305 (+) 1458 WP_002052743.1 glyceraldehyde-3-phosphate dehydrogenase -
  FDQ49_RS14350 (FDQ49_14350) - 3034455..3035189 (+) 735 WP_031945693.1 hypothetical protein -
  FDQ49_RS14355 (FDQ49_14355) - 3035201..3035875 (+) 675 WP_002052875.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77234.01 Da        Isoelectric Point: 5.3351

>NTDB_id=319995 FDQ49_RS14330 WP_004707569.1 3028872..3030893(+) (uvrB) [Acinetobacter nosocomialis M2]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAK
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADRITD
SMQKAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVLSDDQIDEKILEQAQALSADDRHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=319995 FDQ49_RS14330 WP_004707569.1 3028872..3030893(+) (uvrB) [Acinetobacter nosocomialis M2]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
AAATGGCGTCGAAAAAGGTTTTCGTAATCAGTTACTTTTGGGTGTGACTGGTTCCGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACACAGCGACCAACCATTGTGATGGCGCACAATAAGACATTAGCAGCCCAGCTTTATGGTGAATTTAAA
GCCTTCTTCCCAAATAATGCAGTTGAATACTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCTTC
AGATACGTTTATTGAAAAAGATGCAGCAATTAATGACCATATTGACCAGATGCGTTTATCTGCAACACGCGCCTTGCTAG
AGCGTCGTGATGCAATTATTGTAGCTTCTGTTTCTGCTATTTATGGTTTGGGTGACCCAAATGCCTATATGCAAATGTTA
TTGCATGTGGTTCAGGGTGACCGAGTGAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTTTTACGTGGTACTTATCGAATTCGTGGCGAAATTATTGATATTTTCCCGGCAGAATCTGACCAACACGCAA
TTCGTATTGAACTTTTTGATGATGAAGTAGATTCAATTCGTTGGTTTGATCCACTCACCGGTAAGATGGTGCGCAAAGTA
CCACGTGTTACGATTTATCCGAAAAGTCATTATGTAACGCCAAAAGACAACTTAACGCGTGCTATTGATACCATTAAGGA
TGAACTTCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTGCTTGAGGCTCAGCGTATCGAACAGCGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGTTATACCAATGGTATTGAAAACTACTCTCGTCATTTATCAGGCCGTCCAGCA
GGTGAAGCACCACCGACCTTATTTGATTATGTACCGGACGATGCTTTACTTATTATTGATGAGTCACATGTAACTGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCACGTAAAGAAAACTTGGTGAATTATGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAACGTATTGTTCCGACCACTATTTTTGTGAGTGCAACGCCAGCCAAA
TACGAGTTGGAGAAGTCAGAACAAGTGGTTGAGCAGGTCGTTCGTCCTACAGGTTTGATTGATCCTGAAATTGAAGTTCG
TCCAGTGCTTACCCAAGTCGATGATGTTCTGTCTGAAATTAATATTCGTAAGAATTTAAATGAACGTGTATTGGTGACGA
CTTTAACAAAACGTATGGCGGAAGATTTAACATCTTATTTAAAAGAATATGGTGTTAAGGTCGCTTATTTGCACTCGGAT
ATTGATACGGTTGAGCGTGTCAAAATTATTCATGAGTTACGTACAGGTGTATTTGATGTTTTGGTCGGTATTAACTTACT
TCGTGAAGGCTTAGATATGCCAGAGGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAGGGTTTCTTACGTTCAGAAC
GTTCACTTATTCAGACCATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAGGCAATTTTATATGCAGATAGAATTACCGAC
TCTATGCAAAAAGCAATTGATGAGACAGAACGCCGTAGAGCTAAACAAATCGAGTTTAACGAGCTGCATGGTATTACACC
ACGTAGTGCAGTCCGTCAGGCTGTGAAAGAAATTGATACGGGTGAGGTGCTTTCAGATGATCAAATTGATGAGAAAATAT
TGGAGCAGGCACAAGCACTAAGTGCTGATGACCGTCATATTCTTTCTGATCCTAAATTGTTCAGTAAGCATATTACTAAG
CTTGAAAAAGAAATGTTAAAGGCGTCTAAAGATCTACAATTTGAGCAAGCGGCTCGTATTCGTGATGAAATCGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K9Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae R6

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae D39

57.698

99.406

0.574