Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FDV79_RS12035 Genome accession   NZ_CP040103
Coordinates   2511264..2513294 (-) Length   676 a.a.
NCBI ID   WP_140380612.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2506264..2518294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS12010 (FDV79_12900) moaB 2506360..2506872 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  FDV79_RS12015 (FDV79_12905) moaA 2506975..2507964 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  FDV79_RS12020 (FDV79_12910) - 2508260..2509153 (+) 894 WP_005494500.1 YvcK family protein -
  FDV79_RS12025 (FDV79_12915) luxU 2509230..2509568 (-) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  FDV79_RS12030 (FDV79_12920) luxO 2509571..2510974 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FDV79_RS12035 (FDV79_12925) uvrB 2511264..2513294 (-) 2031 WP_140380612.1 excinuclease ABC subunit UvrB Machinery gene
  FDV79_RS12045 (FDV79_12940) rsxA 2514284..2514862 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  FDV79_RS12050 (FDV79_12945) rsxB 2514866..2515462 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -
  FDV79_RS12055 (FDV79_12950) rsxC 2515471..2517966 (+) 2496 WP_178978952.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77071.76 Da        Isoelectric Point: 4.8665

>NTDB_id=319903 FDV79_RS12035 WP_140380612.1 2511264..2513294(-) (uvrB) [Vibrio parahaemolyticus strain LVP66]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGRFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKERDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=319903 FDV79_RS12035 WP_140380612.1 2511264..2513294(-) (uvrB) [Vibrio parahaemolyticus strain LVP66]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCATCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAGGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGTCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTACCAACCAGAAGCGTACGTACCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTGTCTGCCACCAAAGCTTTACTAGAACGAA
AAGACGCCATCATCGTCGCTTCGGTCTCAGCCATTTATGGTTTGGGTGATCCCGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGATATGCTTCGTCGCCTAGCGGAACTTCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCGGTTCCGTGTTCGCGGCGAAGTGATCGACATATTCCCAGCTGAGTCTGACCAAGATGCTGTCCGTG
TTGAAATGTTTGATGATGAAGTGGATTGTATCAGTGTGTTTGATCCATTGACGGGTGTCGTGAAAGAAAGAGATTTGCCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGCATCAAAGTTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTCGGTTTCTGCTCTGGTATCGAAAACTACTCACGTTATCTCAGTGGTCGTTCTGAGGGT
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTGCTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAGTCTCTTGCTCCGCAAACTATTTTCGTCTCGGCAACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACTCAGGTCGATGATCTGTTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAACGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAACATGATGTTCGTGTTCGATATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCACGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGCATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACAAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGTTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTTGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

UvrB/uvrC motif (UVR)

(636-671)

Type III restriction enzyme, res subunit (ResIII)

(13-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.222

98.669

0.555
  uvrB Streptococcus pneumoniae R6

56.222

98.669

0.555
  uvrB Streptococcus pneumoniae D39

56.222

98.669

0.555

Multiple sequence alignment