Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D9N00_RS29165 | Genome accession | NZ_CP032871 |
| Coordinates | 5917352..5917921 (-) | Length | 189 a.a. |
| NCBI ID | WP_003426596.1 | Uniprot ID | A0A0K8M6E3 |
| Organism | Pseudomonas syringae pv. actinidiae strain P220 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5912352..5922921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9N00_RS29140 (D9N00_29140) | - | 5913202..5914095 (+) | 894 | WP_003379184.1 | ABC transporter permease subunit | - |
| D9N00_RS29145 (D9N00_29145) | ugpC | 5914092..5915198 (+) | 1107 | WP_003379187.1 | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | - |
| D9N00_RS29150 (D9N00_29150) | - | 5915205..5915966 (+) | 762 | WP_003379189.1 | glycerophosphoryl diester phosphodiesterase | - |
| D9N00_RS29155 (D9N00_29155) | - | 5915963..5916706 (+) | 744 | WP_003379192.1 | inositol monophosphatase family protein | - |
| D9N00_RS29160 (D9N00_29160) | - | 5916829..5917128 (+) | 300 | WP_003379193.1 | hypothetical protein | - |
| D9N00_RS29165 (D9N00_29165) | ssb | 5917352..5917921 (-) | 570 | WP_003426596.1 | single-stranded DNA-binding protein | Machinery gene |
| D9N00_RS29170 (D9N00_29170) | - | 5917931..5919325 (-) | 1395 | WP_004397022.1 | MFS transporter | - |
| D9N00_RS29175 (D9N00_29175) | uvrA | 5919455..5922289 (+) | 2835 | WP_005614297.1 | excinuclease ABC subunit UvrA | - |
| D9N00_RS29180 (D9N00_29180) | bfr | 5922383..5922847 (-) | 465 | WP_004397024.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 189 a.a. Molecular weight: 20974.10 Da Isoelectric Point: 5.9404
>NTDB_id=319878 D9N00_RS29165 WP_003426596.1 5917352..5917921(-) (ssb) [Pseudomonas syringae pv. actinidiae strain P220]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 570 bp
>NTDB_id=319878 D9N00_RS29165 WP_003426596.1 5917352..5917921(-) (ssb) [Pseudomonas syringae pv. actinidiae strain P220]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.561 |
| ssb | Glaesserella parasuis strain SC1401 |
47.368 |
100 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
44.681 |
99.471 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.681 |
99.471 |
0.444 |