Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D9C18_RS19495 Genome accession   NZ_CP032865
Coordinates   3652390..3652725 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3647390..3657725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS19445 (D9C18_19445) comGC 3647409..3647705 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D9C18_RS19450 (D9C18_19450) comGD 3647695..3648126 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C18_RS19455 (D9C18_19455) comGE 3648110..3648457 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C18_RS19460 (D9C18_19460) comGF 3648483..3648866 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  D9C18_RS19465 (D9C18_19465) comGG 3648867..3649241 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C18_RS19470 (D9C18_19470) spoIITA 3649312..3649491 (+) 180 WP_014480252.1 YqzE family protein -
  D9C18_RS19475 (D9C18_19475) yqzG 3649533..3649859 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C18_RS19480 (D9C18_19480) tapA 3650131..3650892 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C18_RS19485 (D9C18_19485) sipW 3650876..3651448 (+) 573 WP_003230181.1 signal peptidase I SipW -
  D9C18_RS19490 (D9C18_19490) tasA 3651512..3652297 (+) 786 WP_014480250.1 biofilm matrix protein TasA -
  D9C18_RS19495 (D9C18_19495) sinR 3652390..3652725 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D9C18_RS19500 (D9C18_19500) sinI 3652759..3652932 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  D9C18_RS19505 (D9C18_19505) yqhG 3653115..3653909 (-) 795 WP_014480249.1 YqhG family protein -
  D9C18_RS19510 (D9C18_19510) hepAA 3653930..3655603 (-) 1674 WP_014480248.1 SNF2-related protein -
  D9C18_RS19515 (D9C18_19515) gcvT 3656045..3657133 (+) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=319760 D9C18_RS19495 WP_003226345.1 3652390..3652725(-) (sinR) [Bacillus subtilis subsp. subtilis strain N3-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=319760 D9C18_RS19495 WP_003226345.1 3652390..3652725(-) (sinR) [Bacillus subtilis subsp. subtilis strain N3-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment