Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   D9C18_RS19450 Genome accession   NZ_CP032865
Coordinates   3647695..3648126 (+) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3642695..3653126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS19425 (D9C18_19425) corA 3643937..3644890 (+) 954 WP_014480260.1 magnesium transporter CorA -
  D9C18_RS19430 (D9C18_19430) - 3644892..3645089 (+) 198 WP_014480259.1 CBS domain-containing protein -
  D9C18_RS19435 (D9C18_19435) comGA 3645301..3646371 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  D9C18_RS19440 (D9C18_19440) comGB 3646358..3647395 (+) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  D9C18_RS19445 (D9C18_19445) comGC 3647409..3647705 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D9C18_RS19450 (D9C18_19450) comGD 3647695..3648126 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C18_RS19455 (D9C18_19455) comGE 3648110..3648457 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C18_RS19460 (D9C18_19460) comGF 3648483..3648866 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  D9C18_RS19465 (D9C18_19465) comGG 3648867..3649241 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C18_RS19470 (D9C18_19470) spoIITA 3649312..3649491 (+) 180 WP_014480252.1 YqzE family protein -
  D9C18_RS19475 (D9C18_19475) yqzG 3649533..3649859 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C18_RS19480 (D9C18_19480) tapA 3650131..3650892 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C18_RS19485 (D9C18_19485) sipW 3650876..3651448 (+) 573 WP_003230181.1 signal peptidase I SipW -
  D9C18_RS19490 (D9C18_19490) tasA 3651512..3652297 (+) 786 WP_014480250.1 biofilm matrix protein TasA -
  D9C18_RS19495 (D9C18_19495) sinR 3652390..3652725 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D9C18_RS19500 (D9C18_19500) sinI 3652759..3652932 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=319756 D9C18_RS19450 WP_014480256.1 3647695..3648126(+) (comGD) [Bacillus subtilis subsp. subtilis strain N3-1]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=319756 D9C18_RS19450 WP_014480256.1 3647695..3648126(+) (comGD) [Bacillus subtilis subsp. subtilis strain N3-1]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986

Multiple sequence alignment