Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   D9C18_RS12185 Genome accession   NZ_CP032865
Coordinates   2290298..2290417 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2285298..2295417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS12165 (D9C18_12165) pbpG 2285668..2287743 (-) 2076 WP_014481227.1 transglycosylase domain-containing protein -
  D9C18_RS12170 (D9C18_12170) speE 2287945..2288775 (+) 831 WP_003227543.1 spermidine synthase -
  D9C18_RS12175 (D9C18_12175) speB 2288836..2289708 (+) 873 WP_003227545.1 agmatinase -
  D9C18_RS12180 (D9C18_12180) - 2289773..2290200 (-) 428 Protein_2332 YbaK/EbsC family protein -
  D9C18_RS12185 (D9C18_12185) phrF 2290298..2290417 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  D9C18_RS12190 (D9C18_12190) rapF 2290401..2291546 (-) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  D9C18_RS23280 (D9C18_12195) - 2291549..2291779 (+) 231 Protein_2335 hypothetical protein -
  D9C18_RS12200 (D9C18_12200) ywhK 2291776..2293131 (+) 1356 WP_014481224.1 YncE family protein -
  D9C18_RS12205 (D9C18_12205) ywhL 2293170..2294546 (+) 1377 WP_014481223.1 YncE family protein -
  D9C18_RS12210 (D9C18_12210) albG 2294552..2295253 (-) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=319725 D9C18_RS12185 WP_009968329.1 2290298..2290417(-) (phrF) [Bacillus subtilis subsp. subtilis strain N3-1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=319725 D9C18_RS12185 WP_009968329.1 2290298..2290417(-) (phrF) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment