Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FDF20_RS13715 Genome accession   NZ_CP040050
Coordinates   2816516..2818537 (-) Length   673 a.a.
NCBI ID   WP_045543798.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain VB16141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2811516..2823537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDF20_RS13690 (FDF20_13690) - 2811536..2812210 (-) 675 WP_045543800.1 hypothetical protein -
  FDF20_RS13695 (FDF20_13695) - 2812222..2812956 (-) 735 WP_045543799.1 hypothetical protein -
  FDF20_RS13700 (FDF20_13700) - 2813106..2814563 (-) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  FDF20_RS13705 (FDF20_13705) rarD 2814780..2815727 (-) 948 WP_014466252.1 EamA family transporter RarD -
  FDF20_RS13710 (FDF20_13710) - 2815835..2816422 (-) 588 WP_000885644.1 lipocalin family protein -
  FDF20_RS13715 (FDF20_13715) uvrB 2816516..2818537 (-) 2022 WP_045543798.1 excinuclease ABC subunit UvrB Machinery gene
  FDF20_RS13720 (FDF20_13720) - 2818717..2819508 (+) 792 WP_000222202.1 hypothetical protein -
  FDF20_RS13725 (FDF20_13725) - 2819678..2821114 (+) 1437 WP_016653685.1 diguanylate cyclase domain-containing protein -
  FDF20_RS13730 (FDF20_13730) - 2821149..2821328 (-) 180 WP_000139632.1 hypothetical protein -
  FDF20_RS13735 (FDF20_13735) - 2821536..2822765 (+) 1230 WP_000383199.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77287.04 Da        Isoelectric Point: 5.4148

>NTDB_id=319331 FDF20_RS13715 WP_045543798.1 2816516..2818537(-) (uvrB) [Acinetobacter baumannii strain VB16141]
MNENQPFDLVTHYHPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=319331 FDF20_RS13715 WP_045543798.1 2816516..2818537(-) (uvrB) [Acinetobacter baumannii strain VB16141]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCATCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGTCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCTTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCATC
AGATACATTTATTGAAAAAGATGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGACCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACGCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTGACCGGTAAGATGGTTCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGTGCTATCGATACTATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGCTACACCAATGGTATCGAAAACTATTCACGTCATTTATCGGGACGACCGGCA
GGTGAAGCACCACCGACTTTATTTGACTATGTACCAGAAGATGCCTTACTTATTATCGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCAACGACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAGCTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCTGTACTTACCCAAGTCGATGATGTTTTGTCTGAGATTAATATTCGTAAAAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACAGTTGAGCGTGTCAAAATTATTCATGAGTTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCTTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCTGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCATATTACTAAG
TTAGAGAAAGAAATGTTAAAGGCATCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(18-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae R6

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae D39

57.848

99.406

0.575