Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   D9C11_RS08205 Genome accession   NZ_CP032855
Coordinates   1508730..1509887 (-) Length   385 a.a.
NCBI ID   WP_041339513.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503730..1514887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS08175 (D9C11_08175) yvyF 1504009..1504416 (-) 408 WP_121591201.1 TIGR03826 family flagellar region protein -
  D9C11_RS08180 (D9C11_08180) comFC 1504490..1505212 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  D9C11_RS08185 (D9C11_08185) comFB 1505176..1505458 (-) 283 Protein_1601 late competence development ComFB family protein -
  D9C11_RS08190 (D9C11_08190) comFA 1505518..1506909 (-) 1392 WP_121591202.1 ATP-dependent helicase ComFA Machinery gene
  D9C11_RS08195 (D9C11_08195) fakBA 1507015..1507860 (-) 846 WP_121591203.1 DegV family protein -
  D9C11_RS08200 (D9C11_08200) degU 1507958..1508647 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9C11_RS08205 (D9C11_08205) degS 1508730..1509887 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  D9C11_RS08210 (D9C11_08210) yvyE 1510104..1510757 (+) 654 WP_121591204.1 YigZ family protein -
  D9C11_RS08215 (D9C11_08215) tagV 1510757..1511932 (+) 1176 WP_041055022.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  D9C11_RS08220 (D9C11_08220) tagO 1512005..1513081 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -
  D9C11_RS08225 (D9C11_08225) tuaH 1513226..1514419 (-) 1194 WP_121591977.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44966.77 Da        Isoelectric Point: 6.4231

>NTDB_id=319329 D9C11_RS08205 WP_041339513.1 1508730..1509887(-) (degS) [Bacillus subtilis subsp. subtilis strain PJ-7]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPHFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=319329 D9C11_RS08205 WP_041339513.1 1508730..1509887(-) (degS) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAACAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAGCGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTACTCAACTACTTGAATCAGGACTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGAG
GGGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCATTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

99.74

100

0.997

Multiple sequence alignment