Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D9C11_RS08200 Genome accession   NZ_CP032855
Coordinates   1507958..1508647 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502958..1513647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS08165 (D9C11_08165) flgN 1503164..1503646 (-) 483 WP_003227999.1 flagellar protein FlgN -
  D9C11_RS08170 (D9C11_08170) flgM 1503662..1503928 (-) 267 WP_121591200.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9C11_RS08175 (D9C11_08175) yvyF 1504009..1504416 (-) 408 WP_121591201.1 TIGR03826 family flagellar region protein -
  D9C11_RS08180 (D9C11_08180) comFC 1504490..1505212 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  D9C11_RS08185 (D9C11_08185) comFB 1505176..1505458 (-) 283 Protein_1601 late competence development ComFB family protein -
  D9C11_RS08190 (D9C11_08190) comFA 1505518..1506909 (-) 1392 WP_121591202.1 ATP-dependent helicase ComFA Machinery gene
  D9C11_RS08195 (D9C11_08195) fakBA 1507015..1507860 (-) 846 WP_121591203.1 DegV family protein -
  D9C11_RS08200 (D9C11_08200) degU 1507958..1508647 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9C11_RS08205 (D9C11_08205) degS 1508730..1509887 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  D9C11_RS08210 (D9C11_08210) yvyE 1510104..1510757 (+) 654 WP_121591204.1 YigZ family protein -
  D9C11_RS08215 (D9C11_08215) tagV 1510757..1511932 (+) 1176 WP_041055022.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  D9C11_RS08220 (D9C11_08220) tagO 1512005..1513081 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=319328 D9C11_RS08200 WP_003219701.1 1507958..1508647(-) (degU) [Bacillus subtilis subsp. subtilis strain PJ-7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=319328 D9C11_RS08200 WP_003219701.1 1507958..1508647(-) (degU) [Bacillus subtilis subsp. subtilis strain PJ-7]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment