Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D9C11_RS08190 Genome accession   NZ_CP032855
Coordinates   1505518..1506909 (-) Length   463 a.a.
NCBI ID   WP_121591202.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500518..1511909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS08155 (D9C11_08155) flgL 1500715..1501611 (-) 897 WP_103330070.1 flagellar hook-associated protein FlgL -
  D9C11_RS08160 (D9C11_08160) flgK 1501622..1503145 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  D9C11_RS08165 (D9C11_08165) flgN 1503164..1503646 (-) 483 WP_003227999.1 flagellar protein FlgN -
  D9C11_RS08170 (D9C11_08170) flgM 1503662..1503928 (-) 267 WP_121591200.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9C11_RS08175 (D9C11_08175) yvyF 1504009..1504416 (-) 408 WP_121591201.1 TIGR03826 family flagellar region protein -
  D9C11_RS08180 (D9C11_08180) comFC 1504490..1505212 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  D9C11_RS08185 (D9C11_08185) comFB 1505176..1505458 (-) 283 Protein_1601 late competence development ComFB family protein -
  D9C11_RS08190 (D9C11_08190) comFA 1505518..1506909 (-) 1392 WP_121591202.1 ATP-dependent helicase ComFA Machinery gene
  D9C11_RS08195 (D9C11_08195) fakBA 1507015..1507860 (-) 846 WP_121591203.1 DegV family protein -
  D9C11_RS08200 (D9C11_08200) degU 1507958..1508647 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9C11_RS08205 (D9C11_08205) degS 1508730..1509887 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  D9C11_RS08210 (D9C11_08210) yvyE 1510104..1510757 (+) 654 WP_121591204.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52518.57 Da        Isoelectric Point: 9.8019

>NTDB_id=319327 D9C11_RS08190 WP_121591202.1 1505518..1506909(-) (comFA) [Bacillus subtilis subsp. subtilis strain PJ-7]
MNVPVEKNISFSKELRQTLRSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENEPNWQSIKLTWDGKLSNGQQKAANVLIEAISKKEELLIWAVCGAGKTEILFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGSPVFLFVPSVSIMEKAAACFKGVDCRAESVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=319327 D9C11_RS08190 WP_121591202.1 1505518..1506909(-) (comFA) [Bacillus subtilis subsp. subtilis strain PJ-7]
GTGAATGTGCCAGTTGAAAAAAACATTTCCTTTTCAAAAGAATTGCGGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAACGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATTCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGCCTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAAGGTGCTGACATTTCAGCGCTTTACGGAGGAAGTGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTAATGATCGTTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGGAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGTCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATAATGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTGATTGCCGAGCCGAATCTGTGCACGCAGAAGACAAGCATAGGAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCACAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCATTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

96.328

100

0.963

Multiple sequence alignment