Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D9C09_RS16805 Genome accession   NZ_CP032852
Coordinates   3149877..3150212 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3144877..3155212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS16785 (D9C09_16785) gcvT 3145470..3146558 (-) 1089 WP_017696204.1 glycine cleavage system aminomethyltransferase GcvT -
  D9C09_RS16790 (D9C09_16790) hepAA 3146999..3148672 (+) 1674 WP_038829735.1 SNF2-related protein -
  D9C09_RS16795 (D9C09_16795) yqhG 3148693..3149487 (+) 795 WP_014480249.1 YqhG family protein -
  D9C09_RS16800 (D9C09_16800) sinI 3149670..3149843 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D9C09_RS16805 (D9C09_16805) sinR 3149877..3150212 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D9C09_RS16810 (D9C09_16810) tasA 3150305..3151090 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  D9C09_RS16815 (D9C09_16815) sipW 3151154..3151726 (-) 573 WP_003230181.1 signal peptidase I SipW -
  D9C09_RS16820 (D9C09_16820) tapA 3151710..3152471 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C09_RS16825 (D9C09_16825) yqzG 3152743..3153069 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C09_RS16830 (D9C09_16830) spoIITA 3153111..3153290 (-) 180 WP_014480252.1 YqzE family protein -
  D9C09_RS16835 (D9C09_16835) comGG 3153361..3153735 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C09_RS16840 (D9C09_16840) comGF 3153736..3154119 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  D9C09_RS16845 (D9C09_16845) comGE 3154145..3154492 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C09_RS16850 (D9C09_16850) comGD 3154476..3154907 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C09_RS16855 (D9C09_16855) comGC 3154897..3155193 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=319188 D9C09_RS16805 WP_003226345.1 3149877..3150212(+) (sinR) [Bacillus subtilis subsp. subtilis strain GFR-12]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=319188 D9C09_RS16805 WP_003226345.1 3149877..3150212(+) (sinR) [Bacillus subtilis subsp. subtilis strain GFR-12]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment