Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   D9C09_RS01550 Genome accession   NZ_CP032852
Coordinates   293566..293685 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 288566..298685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS01525 (D9C09_01525) albG 288734..289435 (+) 702 WP_069837830.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  D9C09_RS01530 (D9C09_01530) ywhL 289441..290817 (-) 1377 WP_069837831.1 YncE family protein -
  D9C09_RS01535 (D9C09_01535) ywhK 290856..292207 (-) 1352 Protein_301 YncE family protein -
  D9C09_RS23200 (D9C09_01540) - 292204..292434 (-) 231 Protein_302 hypothetical protein -
  D9C09_RS01545 (D9C09_01545) rapF 292437..293582 (+) 1146 WP_069837832.1 response regulator aspartate phosphatase RapF Regulator
  D9C09_RS01550 (D9C09_01550) phrF 293566..293685 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  D9C09_RS01555 (D9C09_01555) - 293783..294210 (+) 428 Protein_305 YbaK/EbsC family protein -
  D9C09_RS01560 (D9C09_01560) speB 294275..295147 (-) 873 WP_003227545.1 agmatinase -
  D9C09_RS01565 (D9C09_01565) speE 295208..296038 (-) 831 WP_003227543.1 spermidine synthase -
  D9C09_RS01570 (D9C09_01570) pbpG 296240..298315 (+) 2076 WP_069837833.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=319145 D9C09_RS01550 WP_009968329.1 293566..293685(+) (phrF) [Bacillus subtilis subsp. subtilis strain GFR-12]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=319145 D9C09_RS01550 WP_009968329.1 293566..293685(+) (phrF) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment