Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   D5S13_RS01540 Genome accession   NZ_CP032821
Coordinates   321248..322234 (-) Length   328 a.a.
NCBI ID   WP_000959288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JDFM SA01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316248..327234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S13_RS01515 (D5S13_00291) - 316508..316855 (-) 348 WP_001242102.1 hypothetical protein -
  D5S13_RS01520 (D5S13_00292) - 317041..317634 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  D5S13_RS01525 (D5S13_00293) - 317738..318103 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  D5S13_RS01530 (D5S13_00294) yjbH 318126..318932 (+) 807 WP_000896696.1 protease adaptor protein YjbH -
  D5S13_RS01535 (D5S13_00295) pepF 319392..321200 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  D5S13_RS01540 (D5S13_00296) coiA 321248..322234 (-) 987 WP_000959288.1 competence protein CoiA Machinery gene
  D5S13_RS01545 (D5S13_00297) mecA 322355..323074 (-) 720 WP_001217728.1 adaptor protein MecA -
  D5S13_RS01550 (D5S13_00298) spxA 323446..323841 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  D5S13_RS01555 (D5S13_00299) trpS 324136..325125 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  D5S13_RS01560 (D5S13_00300) opp4C 325167..326048 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  D5S13_RS01565 (D5S13_00301) opp4B 326060..327022 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38899.50 Da        Isoelectric Point: 9.5881

>NTDB_id=318964 D5S13_RS01540 WP_000959288.1 321248..322234(-) (coiA) [Staphylococcus aureus strain JDFM SA01]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=318964 D5S13_RS01540 WP_000959288.1 321248..322234(-) (coiA) [Staphylococcus aureus strain JDFM SA01]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982

Multiple sequence alignment