Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FDK04_RS03620 Genome accession   NZ_CP039990
Coordinates   746948..747592 (-) Length   214 a.a.
NCBI ID   WP_034016233.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain T2101     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 741948..752592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDK04_RS03590 (FDK04_03700) - 742397..743449 (+) 1053 WP_010793481.1 pyocin knob domain-containing protein -
  FDK04_RS03595 (FDK04_03705) - 743449..743751 (+) 303 WP_003113177.1 hypothetical protein -
  FDK04_RS03600 (FDK04_03710) - 743748..743978 (+) 231 WP_003118930.1 hypothetical protein -
  FDK04_RS03605 (FDK04_03715) - 744397..745002 (+) 606 WP_003085194.1 aminodeoxychorismate/anthranilate synthase component II -
  FDK04_RS03610 (FDK04_03720) trpD 745004..746053 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  FDK04_RS03615 (FDK04_03725) trpC 746050..746886 (+) 837 WP_003085205.1 indole-3-glycerol phosphate synthase TrpC -
  FDK04_RS03620 (FDK04_03730) crp 746948..747592 (-) 645 WP_034016233.1 cAMP-activated global transcriptional regulator CRP Regulator
  FDK04_RS03625 (FDK04_03735) - 747864..748286 (+) 423 WP_003085219.1 OsmC family protein -
  FDK04_RS03630 (FDK04_03740) speD 748605..749399 (+) 795 WP_003101641.1 adenosylmethionine decarboxylase -
  FDK04_RS03635 (FDK04_03745) coq7 749454..750101 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  FDK04_RS03640 (FDK04_03750) - 750201..750539 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  FDK04_RS03645 (FDK04_03755) - 750618..752099 (+) 1482 WP_003117981.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24221.02 Da        Isoelectric Point: 8.0525

>NTDB_id=318946 FDK04_RS03620 WP_034016233.1 746948..747592(-) (crp) [Pseudomonas aeruginosa strain T2101]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMPHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=318946 FDK04_RS03620 WP_034016233.1 746948..747592(-) (crp) [Pseudomonas aeruginosa strain T2101]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGACTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGCGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAATT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTGGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGCCCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGGAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

66.832

94.393

0.631
  crp Haemophilus influenzae Rd KW20

59.901

94.393

0.565
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505