Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CFBP6624_RS08625 Genome accession   NZ_CP039907
Coordinates   1676048..1679008 (+) Length   986 a.a.
NCBI ID   WP_137084718.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP6624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1671048..1684008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6624_RS08590 (CFBP6624_08590) - 1671350..1671751 (+) 402 WP_137084710.1 DUF2946 family protein -
  CFBP6624_RS08595 (CFBP6624_08595) - 1671797..1673161 (+) 1365 WP_137084712.1 PepSY domain-containing protein -
  CFBP6624_RS08600 (CFBP6624_08600) - 1673236..1673712 (-) 477 WP_137084714.1 nuclear transport factor 2 family protein -
  CFBP6624_RS08605 (CFBP6624_08605) - 1673725..1674336 (-) 612 WP_137084716.1 NAD(P)-dependent oxidoreductase -
  CFBP6624_RS08610 (CFBP6624_08610) - 1674493..1674876 (+) 384 WP_046798143.1 helix-turn-helix domain-containing protein -
  CFBP6624_RS08615 (CFBP6624_08615) - 1674894..1675316 (-) 423 WP_137086021.1 GNAT family N-acetyltransferase -
  CFBP6624_RS08620 (CFBP6624_08620) - 1675425..1675778 (-) 354 WP_003507620.1 DMT family protein -
  CFBP6624_RS08625 (CFBP6624_08625) uvrB 1676048..1679008 (+) 2961 WP_137084718.1 excinuclease ABC subunit UvrB Machinery gene
  CFBP6624_RS08630 (CFBP6624_08630) - 1679187..1679831 (-) 645 WP_225341608.1 hypothetical protein -
  CFBP6624_RS08635 (CFBP6624_08635) - 1679965..1680933 (+) 969 WP_137084720.1 alpha/beta hydrolase family protein -
  CFBP6624_RS08640 (CFBP6624_08640) - 1680971..1681396 (-) 426 WP_137084722.1 DUF1801 domain-containing protein -
  CFBP6624_RS08645 (CFBP6624_08645) - 1681560..1682015 (+) 456 WP_046798139.1 PRC-barrel domain-containing protein -
  CFBP6624_RS08650 (CFBP6624_08650) - 1682176..1682787 (+) 612 WP_137084724.1 DUF922 domain-containing Zn-dependent protease -
  CFBP6624_RS08655 (CFBP6624_08655) - 1682795..1683397 (-) 603 WP_046798137.1 J domain-containing protein -

Sequence

Protein


Download         Length: 986 a.a.        Molecular weight: 108295.05 Da        Isoelectric Point: 5.7302

>NTDB_id=318558 CFBP6624_RS08625 WP_137084718.1 1676048..1679008(+) (uvrB) [Agrobacterium tumefaciens strain CFBP6624]
MARSPKKSTSSPPGFEEAPQSSFEGAPLSGSVADWVKQLEAEAEAGSVETQREIASKAGKHRKKIEIEARKEAEKAASKT
AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVDALSKLIESGNPLFKDGKLWTPHRPA
RPPKSEGGVAIRMASDYLPAGDQPTAIADLVEGIDSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY
SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY
TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK
TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKGRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLT
GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA
TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR
YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHVRADISGTSGKGFADGGHLVGNNLQAHLN
ALEKSMRDAAADLDFEKAARLRDEIKRLKAAELATMDDPMAKEEARAVEGGGKNNRRSRLPISSPEGEMSGRTEGGEPHA
ATSLFAKPALDEMGPGSDAGKPLFRRNSLDEMTVGRTEKPVRGALPDKPETEPGKRFSPLLEGQPERTTDDPRPLVRGKI
GAGSYEDAGEQKRKSRTKGKTGRPGR

Nucleotide


Download         Length: 2961 bp        

>NTDB_id=318558 CFBP6624_RS08625 WP_137084718.1 1676048..1679008(+) (uvrB) [Agrobacterium tumefaciens strain CFBP6624]
ATGGCCAGATCACCGAAAAAGTCCACCTCCTCGCCCCCGGGCTTCGAGGAAGCTCCGCAATCGTCATTCGAAGGTGCGCC
GCTCAGCGGCAGCGTCGCCGATTGGGTGAAGCAGCTTGAGGCGGAAGCCGAGGCGGGTTCGGTGGAAACCCAGCGCGAAA
TCGCCTCGAAAGCGGGCAAGCACCGCAAGAAGATCGAGATCGAGGCCCGCAAGGAAGCGGAAAAGGCAGCCTCCAAGACG
GCGAAGAACACCACCGCGTCCAAAACTGCGCGCGGCGTATCCATCGGCGCGTCGAGCGATCCGAAAACCCGCGCCGCCGC
CGGCCTCAACCCGGTGGCCGGCATGGATGTGTCGCTGGAAGAAGCCGCCAATCTCGCCCCGGGCGCCGTCACCGCCACAG
TGGATGCGCTGTCGAAGCTAATCGAGAGCGGCAATCCGCTGTTCAAGGACGGCAAGCTATGGACGCCGCACCGCCCGGCC
CGGCCGCCGAAATCGGAAGGCGGCGTCGCGATCCGCATGGCTTCGGACTACCTGCCCGCCGGTGACCAGCCGACCGCCAT
TGCCGACCTTGTTGAAGGAATCGATTCCGGTGAGCGCAGCCAGGTGCTGCTCGGCGTCACCGGTTCCGGCAAAACCTTCA
CCATGGCCAAGGTCATTGAAGCGACGCAGCGCCCGGCCGTCATCCTTGCCCCCAACAAGACGCTGGCCGCGCAGCTCTAT
TCGGAGTTCAAGAACTTCTTCCCCGACAATGCGGTGGAATATTTCGTCTCCTACTACGATTATTACCAGCCGGAAGCCTA
TGTGCCGCGCTCCGACACCTTCATCGAGAAGGAATCTTCGATCAACGAGCAGATCGACCGGATGCGCCACTCCGCTACCC
GCTCGCTGCTGGAACGCGATGACTGCATCATCGTCGCCTCGGTTTCCTGTATCTACGGTATCGGTTCGGTGGAAACCTAT
ACCGCCATGACTTTCCAGATGCAGGTGGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTCGTGGCCCAGCAATA
CAAACGCCGCGACATGGATTTCCAGCGCGGTTCTTTCCGCGTGCGCGGCGATACCATCGAAATCTTCCCGGCCCACCTTG
AGGACGCCGCCTGGCGCATCTCGATGTTCGGCGACGAGATTGATTCCATCACCGAATTCGACCCGCTGACCGGCCAGAAG
ACCGGCGACCTGCAATCCGTCAAGATTTACGCCAATTCGCACTATGTCACGCCGCGTCCGACGCTGAACGGCGCGATCAA
GTCGATCAAGGAAGAACTGAAGGGCCGCCTCGCCGAGCTGGAAAAGGCTGGACGCCTGCTGGAAGCCCAGCGGCTGGAAC
AGCGCACCCGCTACGACATCGAGATGCTGGAAGCGACCGGCTCCTGCGCCGGCATCGAGAACTATTCGCGTTACCTTACC
GGCCGCAATCCCGGTGAACCGCCGCCGACCCTGTTCGAATATATCCCTGATAACGCCCTCCTTTTCATCGACGAAAGCCA
CGTTTCCGTCAGCCAGATCGGCGGCATGTATCGCGGCGACTTCAGACGTAAGGCGACGCTGGCCGAATATGGCTTTCGCC
TGCCCTCCTGCATGGACAACCGGCCGCTGCGCTTCGAGGAATGGGATGCGATGCGCCCGCTCACCGTGGCGGTGTCCGCC
ACCCCCGGCTCATGGGAGATGGAACAGGCCGGCGGCGTCTTTGCCGAACAGGTCATCCGCCCGACCGGCCTCATCGATCC
GCCGGTGGAAGTGCGCTCGGCCCGCAGCCAGGTCGACGACGTTCTCGGCGAAATTCGCGAGACCGCCGCCAAGGGCTATC
GCACGCTCTGCACCGTGCTGACCAAACGCATGGCCGAGGACCTGACCGAATATCTGCACGAACAGGGCGTTCGCGTCCGC
TACATGCACTCTGACATCGACACGCTGGAGCGTATCGAAATCATCCGCGACCTGCGCCTCGGCGCTTTCGACGTGCTTGT
CGGTATCAACCTGCTGCGCGAAGGCCTCGACATTCCCGAATGCGGTTTCGTCGCCATCCTCGACGCCGACAAGGAAGGCT
TCCTGCGCTCGGAAACCTCGCTGATCCAGACCATCGGCCGCGCCGCGCGTAACGTCGACGGCAAGGTCATCCTTTATGCC
GACAATATCACCGGCTCGATGAAGCGGGCGATGGAGGAAACCTCCCGCCGCCGTGAAAAGCAGATGGCCTATAACGCCGA
ACACGGTATCACGCCGGAATCGGTCAAGGCGAAGATCTCCGATATTCTTGATTCAGTTTATGAGCGCGATCACGTAAGGG
CCGATATTTCTGGCACTTCTGGCAAGGGCTTCGCCGATGGCGGCCATCTGGTCGGCAACAATCTGCAGGCCCATCTCAAC
GCGCTGGAAAAATCCATGCGCGATGCCGCCGCCGACCTCGACTTCGAAAAGGCCGCCCGCCTGCGCGACGAAATCAAGCG
CCTCAAGGCCGCCGAATTGGCCACCATGGACGACCCCATGGCCAAGGAAGAAGCCCGCGCTGTTGAAGGCGGCGGAAAAA
ACAACAGACGCAGCCGCTTGCCGATCTCATCCCCAGAGGGGGAGATGTCCGGCAGGACAGAGGGGGGTGAGCCACACGCC
GCAACCTCCCTCTTCGCCAAACCCGCACTGGACGAAATGGGTCCGGGTTCGGACGCTGGAAAGCCGCTGTTCCGTAGAAA
CTCGCTGGACGAAATGACGGTGGGCAGAACCGAAAAACCCGTACGCGGCGCCCTGCCCGACAAACCGGAAACCGAGCCCG
GCAAACGTTTCTCACCGCTGCTGGAAGGCCAGCCGGAGCGTACGACGGACGATCCAAGACCGCTTGTACGGGGCAAGATC
GGCGCTGGTTCCTACGAGGATGCCGGTGAGCAGAAGCGCAAAAGCCGGACGAAGGGAAAGACCGGCCGTCCCGGCCGCTG
A

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(799-830)

Helicase conserved C-terminal domain (Helicase_C)

(607-710)

Type III restriction enzyme, res subunit (ResIII)

(183-305)

Ultra-violet resistance protein B (UvrB)

(718-759)

UvrB interaction domain (UvrB_inter)

(326-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.639

67.444

0.375
  uvrB Streptococcus pneumoniae R6

55.639

67.444

0.375
  uvrB Streptococcus pneumoniae D39

55.639

67.444

0.375