Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CFBP6623_RS08890 Genome accession   NZ_CP039903
Coordinates   1766808..1769744 (+) Length   978 a.a.
NCBI ID   WP_080842557.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP6623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1761808..1774744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6623_RS08855 (CFBP6623_08855) - 1762111..1762512 (+) 402 WP_046798147.1 DUF2946 family protein -
  CFBP6623_RS08860 (CFBP6623_08860) - 1762558..1763922 (+) 1365 WP_046798146.1 PepSY domain-containing protein -
  CFBP6623_RS08865 (CFBP6623_08865) - 1763997..1764473 (-) 477 WP_046798145.1 nuclear transport factor 2 family protein -
  CFBP6623_RS08870 (CFBP6623_08870) - 1764486..1765097 (-) 612 WP_046798144.1 NAD(P)-dependent oxidoreductase -
  CFBP6623_RS08875 (CFBP6623_08875) - 1765254..1765637 (+) 384 WP_046798143.1 helix-turn-helix domain-containing protein -
  CFBP6623_RS08880 (CFBP6623_08880) - 1765655..1766077 (-) 423 WP_080841996.1 GNAT family N-acetyltransferase -
  CFBP6623_RS08885 (CFBP6623_08885) - 1766186..1766539 (-) 354 WP_003507620.1 DMT family protein -
  CFBP6623_RS08890 (CFBP6623_08890) uvrB 1766808..1769744 (+) 2937 WP_080842557.1 excinuclease ABC subunit UvrB Machinery gene
  CFBP6623_RS08895 (CFBP6623_08895) - 1769923..1770567 (-) 645 WP_233282610.1 hypothetical protein -
  CFBP6623_RS08900 (CFBP6623_08900) - 1770701..1771669 (+) 969 WP_046798141.1 alpha/beta hydrolase family protein -
  CFBP6623_RS08905 (CFBP6623_08905) - 1771707..1772132 (-) 426 WP_046798140.1 DUF1801 domain-containing protein -
  CFBP6623_RS08910 (CFBP6623_08910) - 1772296..1772751 (+) 456 WP_046798139.1 PRC-barrel domain-containing protein -
  CFBP6623_RS08915 (CFBP6623_08915) - 1772912..1773523 (+) 612 WP_046798138.1 DUF922 domain-containing Zn-dependent protease -
  CFBP6623_RS08920 (CFBP6623_08920) - 1773531..1774133 (-) 603 WP_046798137.1 J domain-containing protein -

Sequence

Protein


Download         Length: 978 a.a.        Molecular weight: 107481.13 Da        Isoelectric Point: 5.8264

>NTDB_id=318523 CFBP6623_RS08890 WP_080842557.1 1766808..1769744(+) (uvrB) [Agrobacterium tumefaciens strain CFBP6623]
MARSPKKSTSSPSGFEEAPQSSFEGAPLSGSVADWVKQLEAEAEAGSVETQREIASKAGKHRKKIEIEARKEAEKAASRT
AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVDALSKLIESGNPLFKDGKLWTPHRPA
RPPKSEGGVAIRMASDYLPAGDQPTAIADLVEGIDSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY
SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY
TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK
TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKGRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLT
GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA
TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR
YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHVRADISGTSGKGFADGGHLVGNNLQAHLN
ALEKSMRDAAADLDFEKAARLRDEIKRLKAAELATMDDPMAKEEARAVEGGGKNNRRSRLPISSPEGGEPHAATSLFAKP
ALDEMGPGSDAGKPLFRRNSLDEMTVGRTEKPVRGTVPDKPETEPGKRFSPLLEGQPERTTDDPRPLVRGKIGAGSYEDA
GEQKRKSRTKGKTGRPGR

Nucleotide


Download         Length: 2937 bp        

>NTDB_id=318523 CFBP6623_RS08890 WP_080842557.1 1766808..1769744(+) (uvrB) [Agrobacterium tumefaciens strain CFBP6623]
ATGGCCAGATCACCGAAAAAGTCCACCTCCTCGCCCTCAGGCTTCGAGGAAGCTCCGCAATCGTCATTCGAAGGTGCGCC
GCTCAGCGGCAGCGTCGCCGATTGGGTGAAGCAGCTTGAGGCGGAAGCCGAGGCGGGTTCGGTGGAAACCCAGCGCGAAA
TCGCCTCGAAAGCGGGCAAGCACCGCAAGAAGATCGAGATCGAGGCCCGCAAGGAAGCGGAAAAGGCAGCCTCCAGGACG
GCGAAGAACACCACCGCGTCCAAAACTGCGCGCGGCGTATCCATCGGCGCGTCGAGCGATCCGAAAACCCGCGCCGCCGC
CGGCCTCAACCCGGTGGCAGGCATGGATGTGTCGCTGGAAGAAGCCGCCAATCTCGCCCCGGGCGCCGTCACCGCCACGG
TGGATGCGCTGTCGAAGCTAATCGAGAGCGGCAATCCGCTGTTCAAGGACGGCAAGCTATGGACGCCGCACCGCCCGGCC
CGGCCGCCGAAATCAGAAGGCGGCGTCGCGATCCGCATGGCTTCGGACTACCTGCCCGCCGGTGACCAGCCGACCGCCAT
TGCCGACCTTGTTGAAGGCATCGATTCCGGTGAGCGCAGCCAGGTGCTGCTCGGCGTCACGGGATCGGGCAAGACTTTCA
CCATGGCCAAGGTCATTGAAGCGACGCAGCGCCCGGCCGTCATCCTTGCCCCCAACAAGACGCTGGCCGCGCAGCTCTAT
TCGGAGTTCAAGAACTTCTTCCCCGACAATGCGGTGGAATATTTCGTCTCCTACTACGATTATTACCAGCCGGAAGCCTA
TGTGCCGCGCTCCGACACCTTCATCGAGAAGGAATCTTCGATCAACGAACAGATCGACCGGATGCGCCACTCCGCTACCC
GCTCGCTGCTGGAACGCGATGACTGCATCATCGTCGCCTCGGTCTCCTGCATCTACGGTATCGGTTCGGTCGAGACCTAT
ACGGCGATGACCTTCCAGATGCAGGTGGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTCGTGGCCCAGCAATA
CAAACGCCGCGACATGGATTTCCAGCGCGGTTCTTTCCGTGTGCGCGGCGATACCATCGAAATCTTCCCGGCCCACCTTG
AGGACGCCGCCTGGCGCATCTCGATGTTCGGCGACGAGATTGATTCCATCACCGAATTCGACCCGCTGACCGGCCAGAAG
ACCGGCGACCTGCAATCCGTCAAGATTTACGCCAATTCGCACTATGTCACGCCGCGTCCGACGCTGAACGGCGCGATCAA
GTCGATCAAGGAAGAGCTGAAGGGCCGCCTCGCCGAGCTGGAAAAGGCCGGCCGCCTTCTCGAAGCCCAGCGGCTGGAGC
AGCGCACCCGCTACGACATCGAGATGCTGGAAGCGACCGGCTCCTGCGCCGGCATCGAGAACTATTCGCGTTACCTTACC
GGCCGTAATCCCGGTGAACCGCCGCCGACCCTGTTCGAATATATCCCTGATAACGCCCTCCTCTTCATCGACGAAAGCCA
CGTTTCCGTCAGCCAGATCGGCGGCATGTATCGCGGCGACTTCAGGCGCAAGGCGACGCTGGCCGAATATGGCTTCCGCC
TGCCCTCCTGCATGGACAACCGGCCGCTGCGCTTCGAGGAATGGGATGCGATGCGCCCGCTCACCGTGGCGGTGTCCGCC
ACCCCCGGCTCATGGGAGATGGAACAGGCCGGCGGCGTCTTTGCCGAGCAGGTCATCCGCCCGACCGGCCTCATCGATCC
GCCGGTGGAAGTGCGCTCGGCCCGCAGCCAGGTCGACGACGTTCTCGGCGAAATCCGTGAGACCGCCGCCAAGGGCTATC
GCACGCTCTGCACCGTGCTGACCAAACGCATGGCCGAGGACCTGACCGAATATCTGCACGAACAGGGTGTTCGCGTCCGT
TACATGCACTCTGACATCGACACGCTGGAGCGTATCGAAATCATCCGCGACCTGCGCCTTGGCGCTTTCGACGTGCTTGT
CGGTATCAACCTGCTGCGCGAAGGCCTCGACATTCCCGAATGCGGTTTCGTGGCCATCCTCGACGCCGACAAGGAAGGCT
TCCTGCGCTCGGAAACATCACTGATCCAGACCATCGGCCGCGCCGCGCGTAACGTCGACGGCAAGGTCATCCTTTATGCC
GACAATATCACCGGCTCGATGAAGCGGGCGATGGAAGAAACCTCCCGCCGCCGCGAAAAGCAGATGGCCTATAACGCCGA
ACACGGTATCACGCCGGAATCGGTCAAGGCGAAGATCTCCGATATTCTTGATTCAGTTTATGAGCGCGATCACGTAAGGG
CCGATATTTCTGGCACTTCCGGCAAGGGCTTCGCCGATGGCGGCCATCTGGTCGGCAACAATCTGCAGGCCCATCTCAAC
GCGCTGGAAAAATCCATGCGCGATGCCGCCGCCGACCTCGATTTCGAAAAGGCCGCCCGCCTGCGCGACGAAATCAAGCG
CCTCAAGGCCGCCGAATTGGCCACCATGGACGACCCCATGGCCAAGGAAGAAGCCCGCGCTGTTGAAGGCGGCGGAAAAA
ACAACAGACGCAGCCGCTTGCCGATCTCATCCCCAGAGGGGGGCGAGCCACACGCCGCAACCTCCCTCTTCGCCAAACCC
GCACTGGACGAGATGGGTCCGGGCTCGGACGCTGGAAAGCCGCTGTTCCGCAGAAACTCGCTGGACGAAATGACAGTCGG
CAGAACCGAAAAACCGGTGCGCGGCACCGTTCCCGACAAACCGGAAACCGAGCCCGGCAAACGTTTCTCACCGCTGCTGG
AAGGCCAGCCGGAGCGTACGACGGACGATCCAAGACCGCTTGTACGGGGCAAGATCGGCGCTGGTTCCTACGAGGATGCC
GGTGAGCAGAAGCGCAAAAGCCGGACGAAGGGAAAGACCGGCCGTCCCGGCCGCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(326-415)

UvrB/uvrC motif (UVR)

(799-830)

Ultra-violet resistance protein B (UvrB)

(718-759)

Helicase conserved C-terminal domain (Helicase_C)

(607-710)

Type III restriction enzyme, res subunit (ResIII)

(183-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.639

67.996

0.378
  uvrB Streptococcus pneumoniae R6

55.639

67.996

0.378
  uvrB Streptococcus pneumoniae D39

55.639

67.996

0.378

Multiple sequence alignment