Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CFBP6623_RS07770 Genome accession   NZ_CP039903
Coordinates   1557177..1559282 (+) Length   701 a.a.
NCBI ID   WP_062653905.1    Uniprot ID   A0A1S7P0V9
Organism   Agrobacterium tumefaciens strain CFBP6623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1552177..1564282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6623_RS07755 (CFBP6623_07755) - 1552443..1552781 (-) 339 WP_046798278.1 hypothetical protein -
  CFBP6623_RS07760 (CFBP6623_07760) mfd 1553175..1556672 (-) 3498 WP_046798277.1 transcription-repair coupling factor -
  CFBP6623_RS07765 (CFBP6623_07765) - 1556676..1556987 (-) 312 WP_046798276.1 succinate dehydrogenase assembly factor 2 -
  CFBP6623_RS07770 (CFBP6623_07770) recG 1557177..1559282 (+) 2106 WP_062653905.1 ATP-dependent DNA helicase RecG Machinery gene
  CFBP6623_RS07775 (CFBP6623_07775) - 1559295..1559567 (+) 273 WP_046798274.1 hypothetical protein -
  CFBP6623_RS07780 (CFBP6623_07780) - 1559593..1559885 (-) 293 Protein_1492 type II toxin-antitoxin system RelE/ParE family toxin -
  CFBP6623_RS07785 (CFBP6623_07785) - 1559882..1560127 (-) 246 WP_046798273.1 CopG family ribbon-helix-helix protein -
  CFBP6623_RS07790 (CFBP6623_07790) - 1560245..1560913 (-) 669 WP_046798272.1 DUF502 domain-containing protein -
  CFBP6623_RS07795 (CFBP6623_07795) - 1560927..1561430 (-) 504 WP_046798271.1 N-acetyltransferase -
  CFBP6623_RS07800 (CFBP6623_07800) glmS 1561427..1563253 (-) 1827 WP_046798270.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76388.07 Da        Isoelectric Point: 7.1160

>NTDB_id=318521 CFBP6623_RS07770 WP_062653905.1 1557177..1559282(+) (recG) [Agrobacterium tumefaciens strain CFBP6623]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLNRESADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGVIVTIQGRVDRHQ
PPPSGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSAKVLRKAIEAGLSKLPAFPEWMDETLKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDVAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLALAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVAYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRSAL
KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=318521 CFBP6623_RS07770 WP_062653905.1 1557177..1559282(+) (recG) [Agrobacterium tumefaciens strain CFBP6623]
ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCCTCCGTCTCCACCCTTGCGGGTGTGGGGCCGAAGCTTGCCGATCTTCT
TGCCAAGCTCTTGAACCGGGAAAGCGCGGACGACACCCGTGTCATCGATCTTCTGTTCCATGCGCCGTCAAATGTCATCG
ACCGCCGCAACCGCCCCGGCATTGCGCTGGCGGCTCCCGGCGTCATTGTCACCATTCAGGGACGCGTCGACCGCCACCAG
CCACCGCCATCGGGCAACCGTTCCGCACCCTACCGGGTTTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAAGCCCTGCCTGTCGATGAAGAGGTTCTCGTCAGTGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTGTCCGAGGCCGAGAACCTGCCGCTGGTGGAAGCGGTC
TATCCCATGACTGCCGGGCTGTCTGCCAAGGTGCTGCGCAAGGCAATCGAAGCTGGGCTTTCAAAACTGCCCGCCTTTCC
CGAATGGATGGACGAAACGCTCAAAACCCGGCAGGGTTTTGGCGATGTGGCATCGAGCTTCCGCGAGCTGCACGATCCGC
GCGACAGCGCCGATATCGAGCCGCAGGCACCGGCGCGCCGGCGGCTTGCCTATGATGAATTCCTCGCCGGGCAATTGTCC
TTGGCGCTGGTGCGCCAGCGGCTGCGCAAGGTGGCGGGCCAGCCGATCCGCGCCAAAGGTGACGTTGCCGCAAAAATTCT
GTCGCAGCTGCCCTTCTCGCTGACGGCAAGCCAGAGTGCTGCGGTGAAGGATATTTTGACCGATATGGCCGGCGAAGACC
GTATGCTGCGGCTGCTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCCATGGCAACGGCGGTGGAG
GCTGGTGGACAGGCGGTGCTGATGGCCCCGACCGAAATCCTTGCACGCCAGCACTATGCCACCATCTCCAAACTCGCTCT
CGCAGCAGGCATCACCGTCGAAGTGCTGACAGGCCGTACCAAGGGCAAGGAGCGTCGCGAGATCGAGGAGCGCGTCGCCT
CCGGCGAAGCGCAGATCGTCATCGGCACGCATGCACTGTTTCAGGACAGCGTCGCTTACAAGAACCTCGTGCTTGCCGTG
GTGGATGAACAGCACCGTTTCGGCGTGCACCAGCGCCTGCGCCTCACCGCCAAGGGCATCACGCCGCACATGCTGGTCAT
GACCGCCACGCCCATTCCGCGCACACTTGTCCTGGCAGCCTTCGGCGACATGGATGTGTCGAAACTCACAGAAAAACCCG
CCGGTCGCAAGCCAATCCAGACCGTTACGATCCCAACCGAACGGATCGGCGATATTGTCGAGCGACTGCGTTCAGCGCTG
AAGGATGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAAACGGAAGAATCCGACCTGATGTCGGCGGAAGAGCG
CCATGCGGTTCTCTCGCAGATGCTCGGCGCCAATATAGGTCTTATCCATGGCCGCATGAGCGGCCCGGAAAAAGACGCCG
CCATGCTCGCTTTCAAGAGCGGTGAAACCCGGCTGCTGGTGGCAACGACGGTGGTGGAAGTCGGCGTCGACGTACCGGAT
GCGACAATCATGGTCATCGAACACGCCGAACGTTTCGGCCTCGCCCAGCTTCACCAGCTGCGCGGCCGGGTTGGACGCGG
CGACGAGGCCTCCACCTGTATCCTGCTCTATAAAGGACCGCTCAGCGAAAATGGCCGCGCCCGGCTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATCGCGGAAGAGGATCTGAAGCTGCGTGGTGAAGGCGAGCTGCTCGGCACCCGCCAGTCC
GGCACGCCCGGTTTCCGTATCGCCAGCCTCGAGGCCCATGCCGACCTGTTGGAAATCGCCCGCAAGGACGCAGCCTATGT
CATCGAGCGCGATCCCGAACTGACAGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(476-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

RecG wedge domain (RecG_wedge)

(18-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7P0V9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

39.794

97.147

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.794

97.147

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

38.953

98.146

0.382