Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFBP6623_RS06365 Genome accession   NZ_CP039903
Coordinates   1271497..1272090 (-) Length   197 a.a.
NCBI ID   WP_052760243.1    Uniprot ID   A0ABY8RP91
Organism   Agrobacterium tumefaciens strain CFBP6623     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1266497..1277090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6623_RS06350 (CFBP6623_06350) - 1269225..1269854 (+) 630 WP_046800146.1 MarC family protein -
  CFBP6623_RS06355 (CFBP6623_06355) - 1269986..1271134 (+) 1149 WP_046800145.1 HPP family protein -
  CFBP6623_RS06360 (CFBP6623_06360) - 1271188..1271457 (-) 270 WP_046800144.1 hypothetical protein -
  CFBP6623_RS06365 (CFBP6623_06365) ssb 1271497..1272090 (-) 594 WP_052760243.1 single-stranded DNA-binding protein Machinery gene
  CFBP6623_RS06370 (CFBP6623_06370) uvrA 1272369..1275290 (+) 2922 WP_046800143.1 excinuclease ABC subunit UvrA Machinery gene
  CFBP6623_RS06375 (CFBP6623_06375) - 1275450..1276250 (+) 801 WP_046800142.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 20815.67 Da        Isoelectric Point: 4.7391

>NTDB_id=318518 CFBP6623_RS06365 WP_052760243.1 1271497..1272090(-) (ssb) [Agrobacterium tumefaciens strain CFBP6623]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGGGRSGGGDFGGGGDYGSSGGGSSS
GYGGGYDQQSSSRGGSSRGGGQPSGGFSNDMDDDIPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=318518 CFBP6623_RS06365 WP_052760243.1 1271497..1272090(-) (ssb) [Agrobacterium tumefaciens strain CFBP6623]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
TGTCGGCGCAGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGTATCGCCACCTCGGAAACCT
GGCGCGATCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACGGTCGTGGTTTTCAACGAGGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATTGAAGGTCAGCTGCAGACCCGCAAGTGGCAGGACCAGAC
CGGTAACGACCGCTACTCCACCGAAATCGTGTTGCAGGGCTTCAACTCCACGCTGACCATGCTTGATGGTCGCGGTGAGG
GCGGCGGCGGCGGCCGTAGCGGCGGCGGTGATTTTGGCGGTGGCGGAGATTACGGCAGCAGCGGTGGCGGTTCCAGCTCC
GGTTATGGCGGCGGATACGACCAGCAGTCTTCGTCTCGCGGCGGCTCTTCGCGTGGCGGTGGCCAGCCTTCCGGCGGCTT
CTCCAACGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.721

90.863

0.452
  ssb Glaesserella parasuis strain SC1401

44.33

98.477

0.437