Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   CFBP6623_RS06370 Genome accession   NZ_CP039903
Coordinates   1272369..1275290 (+) Length   973 a.a.
NCBI ID   WP_046800143.1    Uniprot ID   A0A1S7PDD1
Organism   Agrobacterium tumefaciens strain CFBP6623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1267369..1280290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP6623_RS06350 (CFBP6623_06350) - 1269225..1269854 (+) 630 WP_046800146.1 MarC family protein -
  CFBP6623_RS06355 (CFBP6623_06355) - 1269986..1271134 (+) 1149 WP_046800145.1 HPP family protein -
  CFBP6623_RS06360 (CFBP6623_06360) - 1271188..1271457 (-) 270 WP_046800144.1 hypothetical protein -
  CFBP6623_RS06365 (CFBP6623_06365) ssb 1271497..1272090 (-) 594 WP_052760243.1 single-stranded DNA-binding protein Machinery gene
  CFBP6623_RS06370 (CFBP6623_06370) uvrA 1272369..1275290 (+) 2922 WP_046800143.1 excinuclease ABC subunit UvrA Machinery gene
  CFBP6623_RS06375 (CFBP6623_06375) - 1275450..1276250 (+) 801 WP_046800142.1 DUF72 domain-containing protein -
  CFBP6623_RS06380 (CFBP6623_06380) dusA 1276490..1277500 (-) 1011 WP_046800141.1 tRNA dihydrouridine(20/20a) synthase DusA -
  CFBP6623_RS06385 (CFBP6623_06385) - 1277639..1278328 (+) 690 WP_046800140.1 fumarylacetoacetate hydrolase family protein -
  CFBP6623_RS06390 (CFBP6623_06390) - 1278364..1278897 (+) 534 WP_046800139.1 gamma carbonic anhydrase family protein -
  CFBP6623_RS06395 (CFBP6623_06395) zur 1278935..1279348 (-) 414 WP_046800138.1 zinc uptake transcriptional repressor Zur -
  CFBP6623_RS06400 (CFBP6623_06400) znuB 1279345..1280163 (-) 819 WP_046800137.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107077.09 Da        Isoelectric Point: 6.7160

>NTDB_id=318519 CFBP6623_RS06370 WP_046800143.1 1272369..1275290(+) (uvrA) [Agrobacterium tumefaciens strain CFBP6623]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDRIE
GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTISQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLETLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQDVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVYGA
RGNNLQNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPPGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=318519 CFBP6623_RS06370 WP_046800143.1 1272369..1275290(+) (uvrA) [Agrobacterium tumefaciens strain CFBP6623]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGTGCCCGTGAGCATAATCTCAAGGGTATCGACCTCGATCTGCCGCGCAA
CAAGCTGATTGTCATGACCGGGCTTTCCGGCTCGGGCAAGTCGTCGCTTGCCTTCGACACGATCTACGCCGAGGGCCAGC
GCCGTTATGTCGAAAGCCTTTCGGCTTACGCGCGCCAGTTTCTGGAAATGATGCAGAAACCGGATGTCGACCGTATCGAG
GGTCTGTCGCCGGCGATTTCCATCGAGCAGAAGACCACCTCGAAGAACCCGCGTTCCACGGTGGGCACCGTCACGGAAAT
CTACGACTACATGCGCCTGCTGTTTGCGCGTGTCGGCGTGCCCTATTCGCCGGCCACGGGTCTGCCGATCGAGAGCCAGA
CCATCAGCCAGATGGTGGACCGCATCCTCGCTTTCGAAGAAGGCACGCGTCTTTATATTCTTGCGCCGATCGTGCGTGGC
CGCAAAGGCGAATATAAGAAGGAACTTGCCGAGCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGATGTGCCCGCGCTCGACAAGAAATACAAACACGACATCGACGTGGTGGTCGACCGCGCGGTGGTGCGCC
CGGATATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCTATCGCCGAATTCGCC
GACAAGCCTCTGCCGCCGGAAGAAACGGCCGCCGGCGGCTCCGCCAACAAGTCGCTCAACGAAACCCATGAGCGTGTGCT
GTTTTCGGAAAAATTCGCCTGCCCCGTCTCCGGCTTCACCATTCCGGAAATCGAGCCGCGGCTGTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCCAGCTGCGATGGCCTCGGCTCGCAGCAGAAGGTGGATGAGAATCTGATCGTTCCGGAACCTGCC
CGCACGCTGCGCGACGGCGCCATCGCCCCATGGGCCAAGTCGTCTTCTCCCTATTACAACCAGACGCTGGAAGCGCTTGG
CAAGGCCTTCGGTTTTAAACTGTCCAGCAAATGGTCGGACCTTTCGAAAGAAGCGCAGCACGCCATCCTTCAGGGCACCG
ACGACAAGATCGAATTCAACTATCAGGACGGCGCCCGCTCCTACAAGACGGTGAAAAATTTCGAAGGCATCGTTCCCAAT
CTGGAGCGCCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGCGAGGAAATCGAGCGTTATATGTCGGCAGCACCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAACCTGAAGCGCTCGCCGTCAAGATCAACAAGCTGCATATCGGCGAAGTCACCCAGA
TGTCGATCCGCAAGGCACGCGACTGGTTCGAGGTGCTACCGGAAAATCTCAACGCCAAGCAGAACGAGATTGCGGTCCGC
ATTCTCAAGGAAATCCGCGAACGCCTGCGCTTCCTGAATGATGTCGGACTGGATTATCTCAGCCTGTCGCGTAACTCCGG
TACGCTGTCCGGAGGCGAAAGCCAGCGCATTCGCCTCGCGTCGCAGATCGGCTCAGGCCTGACGGGCGTTCTCTACGTTC
TGGACGAGCCATCGATTGGCCTGCATCAGCGTGATAATGCCCGCCTGCTCGAGACGCTGAAACACCTACGTGATATCGGC
AATACTGTCATCGTTGTCGAACATGACGAGGACGCCATTCTGACGGCGGATTATGTGGTCGATATCGGCCCGGCCGCCGG
CATTCACGGCGGTCAGGTGATCGCCGAAGGTACGCCGCAGGACGTGATGGCCAATCCGAAATCGCTGACCGGCAAGTATC
TCTCCGGCGAACTCGGCGTCGCCGTGCCGGCAGAGCGCCGGAAGCCCAAAAAGGGCCGCGAGATCAAGGTCTATGGCGCA
CGCGGCAATAATCTCCAGAATGTCACGGCGGCGGTCCCTCTTGGCGTTTTCACCGCGGTTACCGGCGTTTCAGGCGGTGG
CAAGTCCACCTTCCTGATCGAGACGCTTTATAAATCAGCAGCACGTCGGGTGATGGGTGCGCGCGAAATCCCGGCTGAAC
ATGATCGCATCGACGGTTTCGAATTCATCGACAAGGTAATCGATATCGACCAGTCGCCGATTGGCCGCACGCCGCGCTCC
AACCCGGCCACCTATACCGGCGCCTTCACACCGATCCGCGACTGGTTCGCCGGCCTGCCGGAAGCAAAGGCGCGCGGTTA
TGCGCCCGGCCGTTTCTCCTTCAACGTCAAGGGTGGCCGCTGCGAAGCCTGCCAGGGCGATGGCGTCATCAAGATCGAAA
TGCACTTCCTGCCCGACGTCTACGTCACCTGCGACGTCTGCCACGGCAAGCGCTATAATCGCGAGACGCTCGATGTCACC
TTCAAGGGCAAGTCCATCGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAGTTCTTCGCCGCCGTGCCGGCGGT
GCGCGACAAGCTGCAGGCTTTGTTCGATGTCGGCCTCGGTTACATCAAGGTCGGCCAGCAGGCCAACACGCTATCCGGCG
GCGAGGCGCAACGCGTCAAGCTCGCCAAGGAACTGTCGAAACGCTCGACGGGCCGCACGCTTTACATTCTCGACGAACCA
ACGACCGGCCTTCACTTCCATGACGTCAACAAGTTGCTGGAAATGCTGCAGGCGCTGGTGGACCAGGGCAATTCCGTCGT
GGTGATCGAACACAACCTCGAAGTCATCAAGACGGCCGACTGGATCATCGACATCGGCCCGGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCAACCGGCACACCGGAAGACATCGTCAAGGTCGAACGCTCCTACACCGGTCATTTCCTGAAGGAACTT
CTGGAACGCCGGCCGCCCGGCAAACGCGAGGCTGCGGAGTAG

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7PDD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.664

98.561

0.568
  uvrA Streptococcus pneumoniae TIGR4

57.664

98.561

0.568
  uvrA Streptococcus pneumoniae D39

57.664

98.561

0.568