Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFBP5877_RS06275 Genome accession   NZ_CP039897
Coordinates   1214260..1214844 (-) Length   194 a.a.
NCBI ID   WP_173986923.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5877     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1209260..1219844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5877_RS06260 (CFBP5877_06260) gyrA 1209272..1212064 (-) 2793 WP_080825093.1 DNA gyrase subunit A -
  CFBP5877_RS06265 (CFBP5877_06265) - 1212282..1212911 (+) 630 WP_006316239.1 MarC family protein -
  CFBP5877_RS06270 (CFBP5877_06270) - 1213043..1214191 (+) 1149 WP_080825092.1 HPP family protein -
  CFBP5877_RS06275 (CFBP5877_06275) ssb 1214260..1214844 (-) 585 WP_173986923.1 single-stranded DNA-binding protein Machinery gene
  CFBP5877_RS06280 (CFBP5877_06280) uvrA 1215109..1218030 (+) 2922 WP_080825091.1 excinuclease ABC subunit UvrA Machinery gene
  CFBP5877_RS06285 (CFBP5877_06285) - 1218040..1218681 (+) 642 WP_080825090.1 hypothetical protein -
  CFBP5877_RS06290 (CFBP5877_06290) - 1218678..1219478 (+) 801 WP_080825089.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20618.51 Da        Isoelectric Point: 4.8818

>NTDB_id=318481 CFBP5877_RS06275 WP_173986923.1 1214260..1214844(-) (ssb) [Agrobacterium tumefaciens strain CFBP5877]
MQLPVMKAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGGGRSGGGDFGGGNDYGSGGGSGYG
GGYDQQSSPRGGSSRGGGQPSGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=318481 CFBP5877_RS06275 WP_173986923.1 1214260..1214844(-) (ssb) [Agrobacterium tumefaciens strain CFBP5877]
ATGCAATTGCCGGTCATGAAGGCTGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGAAA
CGTCGGCGCAGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGTATCGCCACCTCGGAGACCT
GGCGCGACCGCAACAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAGGGCCTGTGCAAG
GTCGTGGAGCAATATGTCAAAAAGGGCGCCAAGCTCTATATTGAGGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGAC
CGGCAACGACCGCTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACGATGCTCGATGGTCGTGGTGAAG
GTGGCGGTGGTGGCCGCAGCGGCGGCGGCGATTTCGGCGGTGGCAATGATTATGGTAGCGGCGGCGGCTCCGGTTACGGC
GGCGGTTATGACCAGCAATCCTCGCCGCGCGGCGGCTCTTCCCGTGGCGGCGGCCAGCCTTCAGGCGGCTTCTCCAACGA
TATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

91.237

0.454
  ssb Glaesserella parasuis strain SC1401

44.898

100

0.454