Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   CFBP5877_RS06280 Genome accession   NZ_CP039897
Coordinates   1215109..1218030 (+) Length   973 a.a.
NCBI ID   WP_080825091.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5877     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1210109..1223030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5877_RS06265 (CFBP5877_06265) - 1212282..1212911 (+) 630 WP_006316239.1 MarC family protein -
  CFBP5877_RS06270 (CFBP5877_06270) - 1213043..1214191 (+) 1149 WP_080825092.1 HPP family protein -
  CFBP5877_RS06275 (CFBP5877_06275) ssb 1214260..1214844 (-) 585 WP_173986923.1 single-stranded DNA-binding protein Machinery gene
  CFBP5877_RS06280 (CFBP5877_06280) uvrA 1215109..1218030 (+) 2922 WP_080825091.1 excinuclease ABC subunit UvrA Machinery gene
  CFBP5877_RS06285 (CFBP5877_06285) - 1218040..1218681 (+) 642 WP_080825090.1 hypothetical protein -
  CFBP5877_RS06290 (CFBP5877_06290) - 1218678..1219478 (+) 801 WP_080825089.1 DUF72 domain-containing protein -
  CFBP5877_RS06295 (CFBP5877_06295) dusA 1219485..1220495 (-) 1011 WP_080825088.1 tRNA dihydrouridine(20/20a) synthase DusA -
  CFBP5877_RS06300 (CFBP5877_06300) - 1220634..1221323 (+) 690 WP_080825087.1 fumarylacetoacetate hydrolase family protein -
  CFBP5877_RS06305 (CFBP5877_06305) - 1221360..1221893 (+) 534 WP_080827337.1 gamma carbonic anhydrase family protein -
  CFBP5877_RS06310 (CFBP5877_06310) zur 1221932..1222345 (-) 414 WP_080825086.1 zinc uptake transcriptional repressor Zur -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107009.92 Da        Isoelectric Point: 6.5228

>NTDB_id=318482 CFBP5877_RS06280 WP_080825091.1 1215109..1218030(+) (uvrA) [Agrobacterium tumefaciens strain CFBP5877]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLETLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQEVMASPQSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLQNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=318482 CFBP5877_RS06280 WP_080825091.1 1215109..1218030(+) (uvrA) [Agrobacterium tumefaciens strain CFBP5877]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCACAATCTCAAGGGCATCGATCTGGATCTGCCGCGCAA
CAAGCTGATCGTCATGACCGGGCTTTCCGGCTCGGGCAAGTCGTCGCTTGCCTTCGACACGATCTATGCCGAGGGACAGC
GCCGTTATGTCGAAAGCCTGTCGGCCTATGCGCGCCAGTTCCTGGAAATGATGCAGAAGCCGGATGTCGACCAGATCGAC
GGCCTATCACCGGCTATTTCCATCGAGCAGAAGACCACCTCGCGCAATCCGCGCTCCACGGTTGGCACGGTCACCGAGAT
TTATGACTATATGCGCCTCCTGTTCGCGCGTGTCGGTGTGCCCTATTCGCCTGCCACCGGCCTGCCGATCGAAAGCCAGA
CGGTCAGCCAGATGGTGGACCGCATCCTCGCTTTCGAAGAAGGTACGCGTCTTTACATCCTCGCGCCGATCGTGCGGGGC
CGCAAAGGCGAGTACAAGAAGGAACTGGCGGAGCTGATGAAAAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
TGAAATCGCCGACGTGCCTGCCCTCGACAAGAAATACAAACACGATATCGACGTAGTGGTCGACCGTGCCGTTGTGCGCC
CGGATATGGCAGCGCGTCTTGCCGACAGTCTGGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCAATCGCCGAATTCGCC
GACAAGCCGCTGCCACCGGAAGAAACCGCCGCCGGGGGTTCCGCCAATAAATCGCTCAACGAGACCCATGAGCGTGTGCT
GTTTTCGGAAAAATTCGCCTGCCCCGTTTCCGGCTTTACCATCCCGGAAATCGAGCCGCGGCTTTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCGAGCTGCGATGGCCTCGGTTCGCAGCAGAAGGTGGATGAAAACCTGATCGTTCCAGAGCCTGCC
CGCACGCTGCGCGACGGCGCGATCGCCCCTTGGGCAAAGTCTTCCTCACCTTATTACAACCAGACGCTGGAAGCGCTCGG
CAAGGCCTTCGGTTTCAAGCTGTCGAGCAAATGGTCGGATCTTTCGAAGGAGGCGCAGCACGCCATTCTTCAGGGCACCG
ATGACAAGATCGAATTCAACTATCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTTCCCAAT
CTTGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGCGAGGAAATCGAGCGTTACATGTCGGCAGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAAGCTGCACATCGGCGAAGTCACCCAGA
TGTCAATCCGCAAGGCACGCGACTGGTTTGAGGTGCTGCCGGAAAATCTCAACGCCAAGCAGAACGAGATTGCGGTCCGC
ATCCTCAAGGAAATCCGCGAACGCCTGCGATTCCTCAACGACGTCGGGCTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACACTTTCCGGCGGCGAAAGCCAGCGCATCCGGCTTGCCTCGCAGATCGGCTCGGGTCTGACTGGCGTGCTCTACGTTC
TGGACGAGCCGTCGATCGGCCTGCACCAGCGTGACAATGCCCGCCTGCTCGAGACGCTGAAACATCTGCGCGATATCGGC
AATACCGTCATCGTTGTCGAACATGACGAGGACGCCATTCTGACGGCGGATTATGTGGTCGATATCGGCCCGGCCGCCGG
CATTCACGGCGGTCAGGTCATCGCCGAAGGCACGCCGCAGGAGGTGATGGCCAGCCCGCAATCTCTGACCGGCAAATATC
TCTCGGGCGAACTCGGCGTTGCCGTGCCCGCCGAGCGCCGCAAGCCCAAGAAGGGTCGCGAAATCAAGGTTTTTGGTGCA
CGCGGCAACAATCTCCAGAATGTCACCGCAGCTGTACCGCTTGGCGTCTTCACCGCCGTAACCGGCGTGTCAGGCGGCGG
CAAGTCCACCTTCCTGATCGAGACGCTTTATAAGTCGGCGGCGCGCCGGGTGATGGGCGCGCGCGAAATTCCGGCCGAGC
ACGACCGCATCGACGGTTTCGAATTCATCGACAAGGTGATCGATATCGATCAGTCGCCGATCGGCCGCACGCCGCGCTCC
AACCCCGCCACCTATACCGGCGCCTTTACGCCAATCCGTGACTGGTTCGCCGGCCTGCCGGAAGCCAAGGCGCGCGGTTA
TGCGCCGGGCCGTTTCTCCTTTAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGCGACGGCGTCATCAAGATTGAGA
TGCACTTCCTGCCCGACGTCTACGTCACCTGCGATGTCTGCCACGGCAAGCGCTATAATCGCGAGACGCTGGATGTCACC
TTCAAGGGCAAATCCATCGCCGACGTACTGGATATGACGGTTGAAGAAGGCGTGGAATTCTTCGCCGCTGTGCCAGCAGT
GCGTGACAAGCTGCAATCGCTGTTCGATGTCGGCCTCGGTTACATCAAGGTCGGCCAGCAGGCCAACACGCTATCCGGCG
GCGAGGCGCAACGCGTCAAGCTTGCCAAGGAACTGTCAAAACGCTCGACGGGCCGCACGCTTTACATTCTCGACGAGCCG
ACGACCGGCCTTCACTTCCACGACGTCAACAAGCTGCTGGAAATGCTGCAGGCACTGGTGGACCAGGGCAATTCCGTCGT
GGTGATCGAACACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATTGACATCGGCCCCGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCGACCGGCACACCGGAAGACATCGTCAAGGTCGAGCGCTCCTACACCGGTCATTTCCTCAAGGAACTT
CTGGAACGCCGGCCGGCCGGGAAACGCGAGGCTGCGGAGTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)

UvrA interaction domain (UvrA_inter)

(133-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.56

98.561

0.567
  uvrA Streptococcus pneumoniae TIGR4

57.56

98.561

0.567
  uvrA Streptococcus pneumoniae D39

57.56

98.561

0.567