Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AFLV_RS03550 Genome accession   NC_011567
Coordinates   680330..681079 (+) Length   249 a.a.
NCBI ID   WP_012574315.1    Uniprot ID   B7GH53
Organism   Anoxybacillus flavithermus WK1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 675330..686079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFLV_RS03530 (Aflv_0624) - 675750..677411 (+) 1662 WP_012574311.1 ATPase, T2SS/T4P/T4SS family -
  AFLV_RS03535 (Aflv_0625) pilT 677422..678456 (+) 1035 WP_041638021.1 type IV pilus twitching motility protein PilT Machinery gene
  AFLV_RS03540 (Aflv_0626) - 678463..679674 (+) 1212 WP_012574313.1 type II secretion system F family protein -
  AFLV_RS03545 (Aflv_0627) - 679750..680289 (+) 540 WP_012574314.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AFLV_RS03550 (Aflv_0628) comC 680330..681079 (+) 750 WP_012574315.1 A24 family peptidase Machinery gene
  AFLV_RS03555 (Aflv_0629) pilM 681092..682060 (+) 969 WP_012574316.1 pilus assembly protein PilM -
  AFLV_RS03560 (Aflv_0630) - 682044..682625 (+) 582 WP_041638022.1 PilN domain-containing protein -
  AFLV_RS03565 (Aflv_0631) pilO 682622..683248 (+) 627 WP_041638023.1 type 4a pilus biogenesis protein PilO -
  AFLV_RS03570 (Aflv_0632) - 683262..683702 (+) 441 WP_012574319.1 type II secretion system protein -
  AFLV_RS03575 (Aflv_0633) - 683808..684590 (+) 783 WP_041639268.1 SPOR domain-containing protein -
  AFLV_RS03580 (Aflv_0634) - 684702..685271 (+) 570 WP_041638024.1 Maf family protein -
  AFLV_RS03585 (Aflv_0635) - 685300..685706 (+) 407 Protein_650 UPF0758 domain-containing protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 27149.91 Da        Isoelectric Point: 9.8849

>NTDB_id=31830 AFLV_RS03550 WP_012574315.1 680330..681079(+) (comC) [Anoxybacillus flavithermus WK1]
MLFFISFLLGLLLGSFYNVVGLRVPKGESIVAPRSHCPHCKRTLTAFELIPVVSYVLQKGKCRACSARISFVYPFVELST
AILFALAPLFVGWSAEVAVSWTLISLFIIIFVSDVHYMIIPNRVLLFLAPLLLIERLSFAPLTPWWDSLLGSFVGFTMLF
VIALLSKGGMGGGDIKLFAVIGLALGAKLTVLAFFLSTLVGTVFGLIGMALGRVRRGQPMPFGPAIVVGTLIAYFFGETI
IDAYVKVMM

Nucleotide


Download         Length: 750 bp        

>NTDB_id=31830 AFLV_RS03550 WP_012574315.1 680330..681079(+) (comC) [Anoxybacillus flavithermus WK1]
ATGTTATTTTTTATTTCCTTCCTCCTCGGTCTTCTTCTCGGTTCTTTTTATAACGTTGTCGGGTTAAGGGTGCCGAAAGG
GGAGTCAATTGTTGCGCCGCGTTCGCATTGCCCGCATTGTAAGCGAACGTTAACGGCGTTTGAATTAATTCCGGTCGTTT
CGTATGTGTTGCAGAAAGGGAAATGTCGCGCGTGTTCAGCGCGCATTTCCTTTGTTTATCCGTTCGTTGAGCTGTCCACG
GCGATATTGTTTGCGCTTGCCCCGCTTTTTGTCGGGTGGTCGGCGGAAGTAGCCGTTAGTTGGACGCTCATTTCTTTATT
CATCATTATTTTCGTTTCTGATGTGCATTATATGATTATTCCAAACCGTGTTTTATTATTTTTGGCCCCGCTTCTTCTTA
TTGAGCGCCTATCGTTTGCGCCGCTTACTCCATGGTGGGATAGTTTGCTTGGAAGTTTCGTTGGTTTTACGATGCTGTTT
GTCATTGCACTTTTGAGTAAAGGTGGCATGGGCGGTGGAGATATCAAACTGTTTGCGGTGATCGGTTTGGCTCTTGGGGC
CAAACTAACAGTGTTGGCGTTTTTTTTATCTACGCTTGTCGGGACAGTGTTTGGTCTTATCGGTATGGCGCTCGGACGTG
TGAGACGCGGCCAACCGATGCCGTTTGGACCGGCCATTGTTGTTGGTACGCTCATCGCTTATTTTTTTGGTGAAACGATT
ATCGATGCGTATGTTAAGGTCATGATGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)

Type IV leader peptidase family (Peptidase_A24)

(102-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7GH53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

51.02

98.394

0.502

Multiple sequence alignment