Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   D8S76_RS01415 Genome accession   NZ_CP032699
Coordinates   259361..261331 (+) Length   656 a.a.
NCBI ID   WP_023079331.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY155     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 254361..266331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S76_RS01395 (D8S76_01395) sufU 254407..254886 (+) 480 WP_002986018.1 Fe-S cluster assembly sulfur transfer protein SufU -
  D8S76_RS01400 (D8S76_01400) sufB 254879..256297 (+) 1419 WP_002986015.1 Fe-S cluster assembly protein SufB -
  D8S76_RS01405 (D8S76_01405) - 256449..257630 (-) 1182 WP_023079308.1 D-alanyl-D-alanine carboxypeptidase family protein -
  D8S76_RS01410 (D8S76_01410) pbp3 257798..259030 (-) 1233 WP_023079326.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  D8S76_RS01415 (D8S76_01415) amiA 259361..261331 (+) 1971 WP_023079331.1 peptide ABC transporter substrate-binding protein Regulator
  D8S76_RS01420 (D8S76_01420) amiC 261396..262898 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  D8S76_RS01425 (D8S76_01425) amiD 262898..263824 (+) 927 WP_023079327.1 oligopeptide ABC transporter permease OppC Regulator
  D8S76_RS01430 (D8S76_01430) amiE 263833..264903 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  D8S76_RS01435 (D8S76_01435) amiF 264896..265819 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  D8S76_RS09865 - 265804..265947 (-) 144 WP_366652599.1 IS3 family transposase -
  D8S76_RS01440 (D8S76_01440) - 265968..266147 (-) 180 WP_111695866.1 transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72133.56 Da        Isoelectric Point: 5.0539

>NTDB_id=318252 D8S76_RS01415 WP_023079331.1 259361..261331(+) (amiA) [Streptococcus pyogenes strain TSPY155]
MKKSKWLAAVSVAILSVSALAACGNKNASGGSEATKTYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTVGESDFGSEVEKEMAKLGDEWKDVN
LADAQDGFYNPEKAKVEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKADQNKDVVAAVGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGGFSWAGSKGPLAYKGMKLQDKPVTAKQYENAKEKWMKAKA
KSNAKYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=318252 D8S76_RS01415 WP_023079331.1 259361..261331(+) (amiA) [Streptococcus pyogenes strain TSPY155]
ATGAAGAAAAGTAAATGGTTGGCAGCTGTAAGTGTTGCGATCTTGTCAGTATCCGCTTTGGCAGCTTGTGGTAATAAAAA
TGCTTCAGGTGGCTCAGAAGCTACAAAAACCTACAAGTACGTTTTTGTTAACGATCCAAAATCATTGGATTATATTTTGA
CTAATGGCGGTGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACTTATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
TACGGCTGATGGTGAAGAATATGCCCCAGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGCGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCGTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAATA
TTACTTACGGAATGTTGACTGGAGATATCCGTCATTTAACATGGAATTTGAACCGCACTTCTTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGATTTTCGTCAAGCTATTCAGTTTGCTTTTGACCG
AGCGTCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TAACCGTTGGAGAAAGTGATTTTGGCTCAGAAGTTGAAAAGGAAATGGCAAAACTTGGTGATGAATGGAAAGACGTTAAC
TTAGCTGATGCTCAAGATGGTTTCTATAATCCTGAAAAAGCAAAAGTTGAATTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAGGCAAACGCAGCAACTGTTCAGGAAGCCCAGTCTT
TCAAACAATCTGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATTATTTCATCATGGTGGGGACCAGACTACCAAGA
TCCACGGACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGATCAAA
ATAAGGATGTTGTGGCAGCTGTAGGCCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGACAAC
GATGCGCGCTATAAAGCTTACGCAAAAGCACAAGCCTACCTTACAGATAGTGCCGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCACGAGTTACTAAAGCCGTTCCATTTAGCGGGGGCTTCTCTTGGGCAGGGTCTAAAGGTCCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAATGCAAAAGAAAAATGGATGAAAGCAAAGGCT
AAGTCAAATGCAAAATATGCTGAGAAGTTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.589

100

0.52
  amiA3 Streptococcus thermophilus LMG 18311

50.302

100

0.508
  amiA3 Streptococcus thermophilus LMD-9

50

100

0.505

Multiple sequence alignment