Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D8L98_RS08980 Genome accession   NZ_CP032682
Coordinates   1881236..1881697 (+) Length   153 a.a.
NCBI ID   WP_037542875.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain G3C4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1876236..1886697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8L98_RS08945 (D8L98_08945) - 1876356..1876619 (+) 264 WP_015729220.1 helix-turn-helix domain-containing protein -
  D8L98_RS13265 - 1876634..1876810 (+) 177 WP_162930956.1 hypothetical protein -
  D8L98_RS08950 (D8L98_08950) - 1876827..1877108 (+) 282 WP_157980229.1 DUF2482 family protein -
  D8L98_RS08955 (D8L98_08955) - 1877195..1877452 (+) 258 WP_037542870.1 DUF1108 family protein -
  D8L98_RS08960 (D8L98_08960) - 1877468..1879414 (+) 1947 WP_037542872.1 AAA family ATPase -
  D8L98_RS08970 (D8L98_08970) - 1879622..1880536 (+) 915 WP_037542874.1 RecT family recombinase -
  D8L98_RS08975 (D8L98_08975) - 1880599..1881243 (+) 645 WP_081378287.1 MBL fold metallo-hydrolase -
  D8L98_RS08980 (D8L98_08980) ssb 1881236..1881697 (+) 462 WP_037542875.1 single-stranded DNA-binding protein Machinery gene
  D8L98_RS08985 (D8L98_08985) - 1881712..1882119 (+) 408 WP_037542877.1 hypothetical protein -
  D8L98_RS08990 (D8L98_08990) - 1882135..1882854 (+) 720 WP_037542879.1 hypothetical protein -
  D8L98_RS08995 (D8L98_08995) - 1882906..1883670 (+) 765 WP_051144727.1 DnaD domain protein -
  D8L98_RS09000 (D8L98_09000) - 1883685..1884467 (+) 783 WP_037542880.1 ATP-binding protein -
  D8L98_RS09005 (D8L98_09005) - 1884631..1884837 (+) 207 WP_015729207.1 hypothetical protein -
  D8L98_RS09010 (D8L98_09010) - 1884987..1885238 (+) 252 WP_037542885.1 hypothetical protein -
  D8L98_RS09015 (D8L98_09015) - 1885229..1885465 (+) 237 WP_305960676.1 SAV1978 family virulence-associated passenger protein -
  D8L98_RS09020 (D8L98_09020) - 1885471..1885674 (+) 204 WP_037542889.1 hypothetical protein -
  D8L98_RS09030 (D8L98_09030) - 1885927..1886217 (+) 291 WP_037542893.1 hypothetical protein -
  D8L98_RS09035 (D8L98_09035) - 1886218..1886538 (+) 321 WP_051144728.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16792.71 Da        Isoelectric Point: 7.1063

>NTDB_id=318197 D8L98_RS08980 WP_037542875.1 1881236..1881697(+) (ssb) [Staphylococcus pseudintermedius strain G3C4]
MINRVVLVGRLTKNPELRHTQSGTSVCSFTLAVNRTFTNAQGEREADFINCIALKKTAENIINYLSKGSLAGVDGRLKSR
SYENKEGQRVYVTEVICDSVQFLESKSTNSNQSQGGIASGQYQPKANHVAATSQNPFVNMNDSIDISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=318197 D8L98_RS08980 WP_037542875.1 1881236..1881697(+) (ssb) [Staphylococcus pseudintermedius strain G3C4]
ATGATTAATAGAGTTGTACTTGTAGGTCGATTAACTAAAAATCCTGAATTAAGACATACACAAAGCGGTACAAGTGTTTG
TAGTTTCACGCTTGCTGTAAATCGTACATTTACGAATGCGCAAGGGGAGCGTGAAGCGGATTTCATTAACTGTATTGCTT
TAAAAAAAACAGCAGAGAACATTATTAACTATTTGTCAAAAGGAAGTTTAGCAGGCGTTGATGGTCGTTTAAAATCACGC
AGTTACGAAAACAAAGAGGGACAACGCGTATATGTCACTGAGGTGATATGTGACAGTGTTCAGTTTCTTGAAAGCAAATC
TACTAATAGCAATCAATCACAAGGCGGTATAGCATCCGGACAATATCAACCAAAAGCAAATCATGTCGCTGCTACAAGTC
AAAATCCATTTGTTAATATGAATGATTCAATTGATATTAGTGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.621
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

69.281

0.412

Multiple sequence alignment