Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DV532_RS07215 Genome accession   NZ_CP032677
Coordinates   1546566..1548779 (+) Length   737 a.a.
NCBI ID   WP_056797346.1    Uniprot ID   -
Organism   Pseudomonas sp. Leaf58     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1541566..1553779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV532_RS07195 (DV532_07195) - 1543436..1544059 (+) 624 WP_056797353.1 glutathione S-transferase -
  DV532_RS07200 (DV532_07200) - 1544205..1545137 (+) 933 WP_056797350.1 ABC transporter ATP-binding protein -
  DV532_RS07205 (DV532_07205) - 1545134..1545913 (+) 780 WP_056797348.1 ABC transporter permease -
  DV532_RS07210 (DV532_07210) - 1545797..1546423 (-) 627 WP_120715315.1 DUF2062 domain-containing protein -
  DV532_RS07215 (DV532_07215) comA 1546566..1548779 (+) 2214 WP_056797346.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV532_RS07220 (DV532_07220) exbB 1550496..1551131 (+) 636 WP_027596066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DV532_RS07225 (DV532_07225) - 1551128..1551562 (+) 435 WP_056797219.1 biopolymer transporter ExbD -
  DV532_RS07230 (DV532_07230) lpxK 1551562..1552572 (+) 1011 WP_056797222.1 tetraacyldisaccharide 4'-kinase -
  DV532_RS07235 (DV532_07235) - 1552616..1552801 (+) 186 WP_003247142.1 Trm112 family protein -
  DV532_RS07240 (DV532_07240) kdsB 1552798..1553562 (+) 765 WP_056797225.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79607.51 Da        Isoelectric Point: 10.2653

>NTDB_id=318111 DV532_RS07215 WP_056797346.1 1546566..1548779(+) (comA) [Pseudomonas sp. Leaf58]
MRTGMFALALGLLCLGWLPALPSVGWLVLLAVAGCVCLFTRLWPLGCFLLGLCWACTSAQWALDDRLAAGLDGRTLWLEG
RVVGLPTRTAQGVRFELQEARSRRGELPQRLQLSWFGGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGASG
TVKAGQLLAPVTAGWRDALRQRLLAVEAHGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACALGMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AALLPGFWLSFTAVATLIYCFRARLGGWRPWQAWTRAQWVMATGLLPVLLATGLPVSLSAPLANLVAVPWISLAVLPLAL
LGTLLLPLGGAGEVLLWLAGGLLEVLFRGLALVAQQRPAWLPSALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
APREPVPYGQVEVWQLDVGQGLAVLLRTRHHNVLYDAGPAKGDTDLGERVVLPTLRKLGVSGLDLMVVSHAHADHAGGAA
AIQRGLPVGRVLGGEALDDVQLQPCASDERWMWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEMPRVDWLQAPHHGSRSSSTEAFIRATAPRGVLVSRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRYG
DVEGVRGQRRFWRVGAD

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=318111 DV532_RS07215 WP_056797346.1 1546566..1548779(+) (comA) [Pseudomonas sp. Leaf58]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTGGCTACCTGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCGGTAGCCGGTTGCGTCTGCCTATTCACCCGGCTGTGGCCGCTGGGCTGTTTTCTGCTGGGCTTGTGCT
GGGCCTGCACCTCTGCGCAGTGGGCCCTGGATGATCGCCTGGCTGCCGGGCTGGATGGCCGTACCTTATGGCTGGAGGGC
CGGGTGGTTGGCTTGCCGACCCGTACGGCGCAAGGGGTGCGCTTCGAGCTGCAAGAGGCGCGCTCGCGGCGCGGCGAACT
GCCGCAGCGCCTGCAACTAAGCTGGTTCGGTGGGCCGCCGCTACGCGCGGGTGAGCAGTGGCGCCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGTTGCTTAACCCCCATGGCCCCGACCGGGAAGCACAACTGCTGGCGCGGCGGGTGGGCGCCAGCGGT
ACGGTCAAGGCCGGGCAATTGCTGGCACCGGTAACTGCGGGTTGGCGCGATGCGCTGCGTCAGCGTTTGCTGGCAGTCGA
GGCCCATGGCCGGCAGGCAGCACTGGTGGCACTGGTGCTTGGCGACGGCGCGGGCCTGGCCCGGGAGGACTGGCAGACCT
TGCAGGCCACCGGTACGGTGCACCTGCTGGTGATTTCTGGGCAGCACATCGGCTTGGTGGCGGGTTTGCTGTATGGCCTG
GTCGCCGGGCTGGCGCGCTGGGGGCTGTGGCCGGCCCGGCTGCCGTGGTTGCCTTGGGCTTGCGCTCTGGGCATGAGTGC
CGCGCTGGCTTACGGCTGGCTGGCCGGTGCCGGCGTGCCGGTGCAACGGGCCTGCCTGATGCTGGCTGTGGTGTTGCTTT
GGCGCCTGCGCTTTCGCCATCTGGGCGCCTTTCTACCCCTGCTGCTGGCGCTGGTCGCCGTGTTGCTGGTCGAGCCGTTG
GCGGCACTGCTACCGGGTTTCTGGCTGTCGTTTACTGCCGTGGCCACGCTTATCTATTGCTTCAGGGCCCGCTTGGGCGG
CTGGCGGCCGTGGCAGGCCTGGACGCGGGCGCAATGGGTGATGGCTACCGGTTTGTTACCGGTGTTGCTGGCCACAGGCC
TGCCGGTGAGCCTGAGCGCGCCGCTGGCCAACCTGGTGGCAGTGCCGTGGATCAGCCTGGCGGTGCTGCCGTTGGCGCTG
TTGGGGACATTGCTGTTGCCGCTGGGCGGTGCAGGGGAGGTGCTGTTGTGGCTGGCGGGCGGGCTGCTGGAAGTTTTGTT
CCGAGGTTTGGCGCTGGTAGCGCAACAGCGCCCGGCGTGGCTGCCGTCGGCGCTGCCCCTGTGGGCCTGGTTGCTGGTCT
GCCTGGGCGCGCTGCTGGTGCTGCTACCCCGCGGCGTGCCGCTGCGCGGGTTAGGTGGTGTAATGCTGCTGGCCTTGTGG
GCACCCAGGGAGCCGGTGCCTTACGGGCAGGTCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACAACGTGCTGTACGACGCTGGGCCGGCGAAGGGTGACACTGACCTGGGCGAGCGGGTGGTGCTGCCAA
CCCTGCGCAAGCTTGGGGTGAGTGGCCTGGACCTGATGGTGGTTAGCCATGCTCATGCTGATCATGCCGGTGGTGCTGCG
GCCATCCAGCGTGGCTTGCCGGTCGGGCGGGTGTTGGGTGGTGAGGCGTTGGATGATGTCCAGCTTCAGCCGTGTGCCAG
TGACGAGCGATGGATGTGGGATGGCGTGCGTTTTTCGCTGTGGCGCTGGGCCGATGGGCAGAGCAGCAATGACCGTTCCT
GCGTGCTGCTGGTCGAGGCGCAGGGTGAGCGGTTGCTGCTGGCGGGTGATATGGAAGCCGGGGCCGAGCGGGCTTGGTTG
GCGGCCACTGAAATGCCGCGTGTCGATTGGCTGCAGGCGCCGCACCATGGCAGCCGCAGTTCCTCCACCGAGGCCTTTAT
TCGCGCCACGGCGCCGCGCGGGGTACTGGTATCGCGGGGGCGCAATAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AGCGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGCTGCGGTTGGTGTTGGGGCGTTATGGG
GACGTAGAGGGTGTGCGGGGGCAGCGGCGGTTTTGGCGGGTGGGTGCGGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.194

97.829

0.589
  comA Ralstonia pseudosolanacearum GMI1000

35.76

100

0.38

Multiple sequence alignment