Detailed information
Bioinformatically predicted
Overview
| Name | exbB | Type | Machinery gene |
| Locus tag | DV532_RS07220 | Genome accession | NZ_CP032677 |
| Coordinates | 1550496..1551131 (+) | Length | 211 a.a. |
| NCBI ID | WP_027596066.1 | Uniprot ID | A0A0Q4NFV9 |
| Organism | Pseudomonas sp. Leaf58 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1545496..1556131
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV532_RS07210 (DV532_07210) | - | 1545797..1546423 (-) | 627 | WP_120715315.1 | DUF2062 domain-containing protein | - |
| DV532_RS07215 (DV532_07215) | comA | 1546566..1548779 (+) | 2214 | WP_056797346.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| DV532_RS07220 (DV532_07220) | exbB | 1550496..1551131 (+) | 636 | WP_027596066.1 | MotA/TolQ/ExbB proton channel family protein | Machinery gene |
| DV532_RS07225 (DV532_07225) | - | 1551128..1551562 (+) | 435 | WP_056797219.1 | biopolymer transporter ExbD | - |
| DV532_RS07230 (DV532_07230) | lpxK | 1551562..1552572 (+) | 1011 | WP_056797222.1 | tetraacyldisaccharide 4'-kinase | - |
| DV532_RS07235 (DV532_07235) | - | 1552616..1552801 (+) | 186 | WP_003247142.1 | Trm112 family protein | - |
| DV532_RS07240 (DV532_07240) | kdsB | 1552798..1553562 (+) | 765 | WP_056797225.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| DV532_RS07245 (DV532_07245) | - | 1553562..1554026 (+) | 465 | WP_056797228.1 | low molecular weight protein-tyrosine-phosphatase | - |
| DV532_RS07250 (DV532_07250) | murB | 1554023..1555042 (+) | 1020 | WP_056797231.1 | UDP-N-acetylmuramate dehydrogenase | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 22887.22 Da Isoelectric Point: 7.3616
>NTDB_id=318112 DV532_RS07220 WP_027596066.1 1550496..1551131(+) (exbB) [Pseudomonas sp. Leaf58]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA
Nucleotide
Download Length: 636 bp
>NTDB_id=318112 DV532_RS07220 WP_027596066.1 1550496..1551131(+) (exbB) [Pseudomonas sp. Leaf58]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTAGGCCAGGTATGGATGTGGATCAAGGACA
AACAGCTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTCGCTGCTGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTGATCCACGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCTTGCTGGGTACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGGTCGCAGATGACCGCCAACGCCGCGGTGCTGGCCGGGGGTATCTCCAAGGCCCTGGTCACCACCGCA
GCCGGCCTGATGATTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTAGGCCAGGTATGGATGTGGATCAAGGACA
AACAGCTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTCGCTGCTGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTGATCCACGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCTTGCTGGGTACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGGTCGCAGATGACCGCCAACGCCGCGGTGCTGGCCGGGGGTATCTCCAAGGCCCTGGTCACCACCGCA
GCCGGCCTGATGATTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| exbB | Pseudomonas stutzeri DSM 10701 |
81.991 |
100 |
0.82 |