Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   E8M05_RS09380 Genome accession   NZ_CP039457
Coordinates   1792070..1794085 (-) Length   671 a.a.
NCBI ID   WP_136596465.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1787070..1799085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS09350 (E8M05_09340) - 1787502..1787954 (+) 453 WP_003066277.1 universal stress protein -
  E8M05_RS09355 (E8M05_09345) - 1788031..1789434 (-) 1404 WP_003066280.1 HAD-IIB family hydrolase -
  E8M05_RS09360 (E8M05_09350) - 1789505..1790467 (+) 963 WP_003066282.1 asparaginase -
  E8M05_RS09365 (E8M05_09355) - 1790532..1790735 (-) 204 WP_003066286.1 helix-turn-helix transcriptional regulator -
  E8M05_RS09370 (E8M05_09360) - 1790748..1791227 (-) 480 WP_003066288.1 DUF2975 domain-containing protein -
  E8M05_RS09375 (E8M05_09365) - 1791278..1791628 (-) 351 WP_003066291.1 hypothetical protein -
  E8M05_RS09380 (E8M05_09370) recG/mmsA 1792070..1794085 (-) 2016 WP_136596465.1 ATP-dependent DNA helicase RecG Machinery gene
  E8M05_RS09385 (E8M05_09375) alr 1794172..1795278 (-) 1107 WP_003066300.1 alanine racemase -
  E8M05_RS09390 (E8M05_09380) acpS 1795335..1795694 (-) 360 WP_003066305.1 holo-ACP synthase -
  E8M05_RS09395 (E8M05_09385) - 1795816..1796871 (-) 1056 WP_003066308.1 3-deoxy-7-phosphoheptulonate synthase -
  E8M05_RS09400 (E8M05_09390) - 1796875..1797906 (-) 1032 WP_003066311.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74629.64 Da        Isoelectric Point: 5.9101

>NTDB_id=317856 E8M05_RS09380 WP_136596465.1 1792070..1794085(-) (recG/mmsA) [Streptococcus pasteurianus strain WUSP067]
MNLQSSIVELKGIGAKSAEKFYKLDIYTIEDLLLYYPFRYEDFKSKSVSELADGEKAVITGTVVTPANVQYYGYKRNRLS
FKIKQGEAVIAISFFNQPYLADKVEIGSDIAIFGKWDALKSAVTGMKILAQVEDDMQPVYRVAQGISQNALVKAIKSAFE
IGAQNWLPENLPQVLLDKYRLLGRAQATAAMHFPKDLAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQ
KVADKIAALPFTLTGGQRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQHFES
LTQLFPDLSIAILTSGMKTAAKQAALSAIVDGSVDMIVGTHALIQDAVTYHRLGLVITDEQHRFGVNQRRVFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKEELQKGAQAYVISPLIEESESLDLKN
AVALHEELSAYFADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAILVANPKTQTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR
VASQIVSKKDWQNNPQWQIVSQNLKDKGTFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=317856 E8M05_RS09380 WP_136596465.1 1792070..1794085(-) (recG/mmsA) [Streptococcus pasteurianus strain WUSP067]
ATGAATTTACAATCATCAATTGTGGAATTAAAAGGAATAGGGGCTAAGTCGGCGGAAAAATTTTATAAGTTAGATATTTA
TACCATTGAAGATTTACTGCTGTACTATCCTTTTCGATATGAAGATTTTAAGAGTAAGAGTGTTTCAGAGCTTGCTGATG
GGGAAAAAGCTGTCATTACGGGAACGGTTGTGACACCTGCAAATGTGCAATATTATGGTTATAAGCGTAATCGTTTGTCG
TTTAAAATCAAGCAGGGCGAAGCGGTTATTGCGATTTCTTTTTTTAACCAGCCTTATTTAGCTGATAAAGTCGAGATTGG
CAGCGATATCGCGATTTTTGGAAAATGGGATGCCCTAAAATCAGCGGTGACTGGTATGAAAATTTTAGCGCAAGTTGAAG
ATGATATGCAGCCAGTTTACCGTGTTGCTCAAGGTATTTCACAAAATGCACTAGTCAAAGCTATCAAATCAGCTTTTGAA
ATTGGTGCTCAGAATTGGTTGCCTGAAAATTTACCGCAGGTGCTTTTGGACAAGTATCGTTTGTTAGGGCGTGCTCAAGC
AACGGCTGCTATGCACTTTCCGAAAGATTTAGCAGAGTATAAACAAGCACTTCGTCGGATAAAATTTGAAGAACTGTTCT
ATTTTCAAATGAATTTGCAAGCTTTAAAGGCAGACAATAAATCAGAAGCTAATGGTTTGGCGATTGCTTATGATGAGCAA
AAAGTTGCTGATAAGATTGCAGCTCTGCCATTTACCTTGACGGGTGGTCAAAGGCGGAGTCTTGATGATATTTTGGCGGA
TATGCGTTCTGGTGGTCATATGAATCGTCTCTTGCAAGGGGACGTTGGTTCTGGTAAGACGGTTGTGGCTAGTCTTGCCA
TGTATGCTACTTATACGGCAGGTTTTCAATCAGCTTTGATGGTGCCAACGGAAATTTTGGCGGAGCAGCATTTTGAAAGT
TTGACCCAGCTTTTTCCAGATTTGTCCATTGCAATTTTAACATCAGGGATGAAAACAGCAGCCAAACAAGCGGCACTTTC
GGCGATTGTGGATGGTTCGGTAGATATGATTGTTGGTACGCATGCGCTGATTCAAGATGCGGTAACTTACCACCGCTTGG
GGCTTGTCATTACTGATGAACAACACCGTTTTGGTGTCAATCAACGTCGTGTTTTCCGTGAAAAGGGCGAAAATCCAGAT
GTGCTCATGATGACTGCAACACCAATTCCACGGACACTTGCTATTACGGCATTTGGTGAAATGGACGTTTCGATTATTGA
TGAATTGCCTGCAGGACGCAAACCGATTATCACGCGTTGGGTTAAACATGAACAGTTGGAAGTTGTGCTTGATTGGGTCA
AAGAAGAATTGCAAAAAGGGGCACAAGCCTATGTGATTTCACCTTTAATTGAAGAATCTGAATCACTTGATTTGAAAAAT
GCTGTTGCCTTGCACGAGGAATTGTCAGCCTATTTTGCGGATAGTGCAACCGTAGCGCTCATGCATGGTCGCATGAAAAA
TGACGAAAAAGAAGCTATCATGCAAGATTTCAAGGCACAAAAAAGTCAGGTTTTGGTATCGACAACCGTCATTGAAGTTG
GTGTTAATGTCCCAAATGCGACCATTATGATTATTATGGATGCTGACCGATTTGGGCTTAGCCAGTTGCATCAGCTTCGT
GGACGAGTTGGGCGTGGAGATAAACAATCTTATGCTATTTTAGTCGCCAATCCCAAAACACAAACAGGAAAAGAGCGCAT
GAAAATCATGACAGAAACAACGGATGGTTTTGTTTTAGCAGAAGCCGACCTTAAAATGCGTGGTTCAGGTGAGATTTTCG
GCACACGCCAATCAGGAATTCCAGAATTCCAAGTGGCAGATATTGTCGAAGATTACAATATTCTCGAGGAAGCTAGACGC
GTTGCAAGTCAGATCGTTTCCAAAAAAGATTGGCAAAACAATCCACAATGGCAAATTGTTAGCCAAAATCTCAAAGACAA
AGGAACTTTTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

DEAD/DEAH box helicase (DEAD)

(257-409)

RecG wedge domain (RecG_wedge)

(10-157)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.343

100

0.703
  recG/mmsA Streptococcus pneumoniae R36A

70.343

100

0.703
  recG Bacillus subtilis subsp. subtilis str. 168

49.183

100

0.493
  recG Neisseria meningitidis strain C311

38.914

98.808

0.385