Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D7032_RS19000 Genome accession   NZ_CP032664
Coordinates   4225785..4226528 (-) Length   247 a.a.
NCBI ID   WP_107110434.1    Uniprot ID   A0A7T8EF16
Organism   Shewanella algae strain HIDE     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4220785..4231528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7032_RS18990 (D7032_18970) fdxH 4220959..4221882 (-) 924 WP_025887978.1 formate dehydrogenase subunit beta -
  D7032_RS18995 (D7032_18975) fdnG 4221885..4224899 (-) 3015 WP_093983768.1 formate dehydrogenase-N subunit alpha -
  D7032_RS19000 (D7032_18980) ssb 4225785..4226528 (-) 744 WP_107110434.1 single-stranded DNA-binding protein Machinery gene
  D7032_RS19005 (D7032_18985) - 4226563..4227930 (-) 1368 WP_025010184.1 MFS transporter -
  D7032_RS19010 (D7032_18990) uvrA 4228152..4230974 (+) 2823 WP_101058423.1 excinuclease ABC subunit UvrA -
  D7032_RS19015 (D7032_18995) - 4230982..4231332 (+) 351 WP_129979955.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27232.66 Da        Isoelectric Point: 5.9130

>NTDB_id=317720 D7032_RS19000 WP_107110434.1 4225785..4226528(-) (ssb) [Shewanella algae strain HIDE]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQPQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDG
WDDDIPF

Nucleotide


Download         Length: 744 bp        

>NTDB_id=317720 D7032_RS19000 WP_107110434.1 4225785..4226528(-) (ssb) [Shewanella algae strain HIDE]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCACAACAGCCACAACAGCCACAACAGCCACAACAGCCACAACAGCAGTA
CAACGCGCCGCAGCAGCAAAGCTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAAC
AACAGGCTGCTCCGCAGCAGCGTCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGC
TGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T8EF16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.021

77.733

0.49
  ssb Glaesserella parasuis strain SC1401

44.672

98.785

0.441
  ssb Neisseria meningitidis MC58

40.083

97.976

0.393

Multiple sequence alignment