Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CFM83_RS06235 Genome accession   NZ_CP032640
Coordinates   1230319..1230618 (-) Length   99 a.a.
NCBI ID   WP_025016383.1    Uniprot ID   A0A9N7P7J9
Organism   Latilactobacillus sakei strain ZFM229     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1225319..1235618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFM83_RS06200 (CFM83_06200) - 1225950..1226408 (-) 459 WP_035145008.1 hypothetical protein -
  CFM83_RS06205 (CFM83_06205) - 1226463..1227659 (-) 1197 WP_011374993.1 acetate/propionate family kinase -
  CFM83_RS06210 (CFM83_06210) - 1227681..1228691 (-) 1011 WP_016265372.1 class I SAM-dependent methyltransferase -
  CFM83_RS06215 (CFM83_06215) - 1228815..1229153 (-) 339 WP_035145011.1 hypothetical protein -
  CFM83_RS06220 (CFM83_06220) comGF 1229116..1229628 (-) 513 WP_035145013.1 competence type IV pilus minor pilin ComGF Machinery gene
  CFM83_RS06225 (CFM83_06225) comGE 1229603..1229908 (-) 306 WP_016265375.1 hypothetical protein Machinery gene
  CFM83_RS06230 (CFM83_06230) comGD 1229895..1230299 (-) 405 WP_235596237.1 hypothetical protein Machinery gene
  CFM83_RS06235 (CFM83_06235) comGC 1230319..1230618 (-) 300 WP_025016383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CFM83_RS06240 (CFM83_06240) comGB 1230615..1231622 (-) 1008 WP_061827023.1 type II secretion system F family protein Machinery gene
  CFM83_RS06245 (CFM83_06245) comGA 1231615..1232505 (-) 891 WP_025016380.1 competence type IV pilus ATPase ComGA Machinery gene
  CFM83_RS06250 (CFM83_06250) - 1232622..1233353 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CFM83_RS06255 (CFM83_06255) - 1233444..1233944 (-) 501 WP_016265379.1 VanZ family protein -
  CFM83_RS06260 (CFM83_06260) - 1234041..1234415 (+) 375 WP_011375004.1 hypothetical protein -
  CFM83_RS06270 (CFM83_06270) - 1234602..1235216 (-) 615 WP_016265380.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11067.03 Da        Isoelectric Point: 10.1321

>NTDB_id=317503 CFM83_RS06235 WP_025016383.1 1230319..1230618(-) (comGC) [Latilactobacillus sakei strain ZFM229]
MKKKRNAFTLIEMVIVLAIVALLILLISPNLVAQKQRAEKKTDQALVTTLQTQVELAADEQGHQIKSLDELTDKYISKDQ
LKHAKEKGITIDSGTVKQK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=317503 CFM83_RS06235 WP_025016383.1 1230319..1230618(-) (comGC) [Latilactobacillus sakei strain ZFM229]
ATGAAGAAAAAAAGAAATGCTTTTACATTAATCGAAATGGTAATTGTTCTAGCAATTGTGGCGTTGTTAATTTTATTAAT
CTCACCAAATTTGGTGGCTCAAAAACAGCGCGCGGAGAAGAAAACCGATCAAGCTTTAGTGACGACTTTACAAACGCAAG
TTGAATTGGCTGCCGATGAACAAGGTCATCAAATTAAGAGTCTAGATGAATTAACGGATAAGTATATTTCAAAAGACCAA
TTAAAGCACGCAAAGGAGAAGGGGATTACAATTGATAGCGGCACGGTTAAGCAAAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

89.899

100

0.899

Multiple sequence alignment