Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | CFM83_RS06240 | Genome accession | NZ_CP032640 |
| Coordinates | 1230615..1231622 (-) | Length | 335 a.a. |
| NCBI ID | WP_061827023.1 | Uniprot ID | A0AAE8J400 |
| Organism | Latilactobacillus sakei strain ZFM229 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1225615..1236622
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFM83_RS06200 (CFM83_06200) | - | 1225950..1226408 (-) | 459 | WP_035145008.1 | hypothetical protein | - |
| CFM83_RS06205 (CFM83_06205) | - | 1226463..1227659 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| CFM83_RS06210 (CFM83_06210) | - | 1227681..1228691 (-) | 1011 | WP_016265372.1 | class I SAM-dependent methyltransferase | - |
| CFM83_RS06215 (CFM83_06215) | - | 1228815..1229153 (-) | 339 | WP_035145011.1 | hypothetical protein | - |
| CFM83_RS06220 (CFM83_06220) | comGF | 1229116..1229628 (-) | 513 | WP_035145013.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CFM83_RS06225 (CFM83_06225) | comGE | 1229603..1229908 (-) | 306 | WP_016265375.1 | hypothetical protein | Machinery gene |
| CFM83_RS06230 (CFM83_06230) | comGD | 1229895..1230299 (-) | 405 | WP_235596237.1 | hypothetical protein | Machinery gene |
| CFM83_RS06235 (CFM83_06235) | comGC | 1230319..1230618 (-) | 300 | WP_025016383.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CFM83_RS06240 (CFM83_06240) | comGB | 1230615..1231622 (-) | 1008 | WP_061827023.1 | type II secretion system F family protein | Machinery gene |
| CFM83_RS06245 (CFM83_06245) | comGA | 1231615..1232505 (-) | 891 | WP_025016380.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CFM83_RS06250 (CFM83_06250) | - | 1232622..1233353 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CFM83_RS06255 (CFM83_06255) | - | 1233444..1233944 (-) | 501 | WP_016265379.1 | VanZ family protein | - |
| CFM83_RS06260 (CFM83_06260) | - | 1234041..1234415 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
| CFM83_RS06270 (CFM83_06270) | - | 1234602..1235216 (-) | 615 | WP_016265380.1 | hypothetical protein | - |
| CFM83_RS06275 (CFM83_06275) | - | 1235213..1236001 (-) | 789 | WP_061827022.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38425.38 Da Isoelectric Point: 9.5446
>NTDB_id=317504 CFM83_RS06240 WP_061827023.1 1230615..1231622(-) (comGB) [Latilactobacillus sakei strain ZFM229]
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVHFPADYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRHREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVHFPADYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRHREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=317504 CFM83_RS06240 WP_061827023.1 1230615..1231622(-) (comGB) [Latilactobacillus sakei strain ZFM229]
ATGTATAAGTCACGACAACAAGCGCAATTTTATGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTACAACAAGCTTTTGCTTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGTGACAGTCTGGCAGTCAGTTTAGCGCATGTTCATTTTCCGGCTGATTATGTTGGTCAAATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAGCGCCATCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTCACGACAACAAGCGCAATTTTATGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTACAACAAGCTTTTGCTTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGTGACAGTCTGGCAGTCAGTTTAGCGCATGTTCATTTTCCGGCTGATTATGTTGGTCAAATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAGCGCCATCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.507 |
100 |
0.985 |