Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   CFM83_RS06225 Genome accession   NZ_CP032640
Coordinates   1229603..1229908 (-) Length   101 a.a.
NCBI ID   WP_016265375.1    Uniprot ID   A0A9N7J126
Organism   Latilactobacillus sakei strain ZFM229     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224603..1234908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFM83_RS06190 (CFM83_06190) - 1225042..1225407 (+) 366 WP_011374991.1 DUF805 domain-containing protein -
  CFM83_RS06200 (CFM83_06200) - 1225950..1226408 (-) 459 WP_035145008.1 hypothetical protein -
  CFM83_RS06205 (CFM83_06205) - 1226463..1227659 (-) 1197 WP_011374993.1 acetate/propionate family kinase -
  CFM83_RS06210 (CFM83_06210) - 1227681..1228691 (-) 1011 WP_016265372.1 class I SAM-dependent methyltransferase -
  CFM83_RS06215 (CFM83_06215) - 1228815..1229153 (-) 339 WP_035145011.1 hypothetical protein -
  CFM83_RS06220 (CFM83_06220) comGF 1229116..1229628 (-) 513 WP_035145013.1 competence type IV pilus minor pilin ComGF Machinery gene
  CFM83_RS06225 (CFM83_06225) comGE 1229603..1229908 (-) 306 WP_016265375.1 hypothetical protein Machinery gene
  CFM83_RS06230 (CFM83_06230) comGD 1229895..1230299 (-) 405 WP_235596237.1 hypothetical protein Machinery gene
  CFM83_RS06235 (CFM83_06235) comGC 1230319..1230618 (-) 300 WP_025016383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CFM83_RS06240 (CFM83_06240) comGB 1230615..1231622 (-) 1008 WP_061827023.1 type II secretion system F family protein Machinery gene
  CFM83_RS06245 (CFM83_06245) comGA 1231615..1232505 (-) 891 WP_025016380.1 competence type IV pilus ATPase ComGA Machinery gene
  CFM83_RS06250 (CFM83_06250) - 1232622..1233353 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CFM83_RS06255 (CFM83_06255) - 1233444..1233944 (-) 501 WP_016265379.1 VanZ family protein -
  CFM83_RS06260 (CFM83_06260) - 1234041..1234415 (+) 375 WP_011375004.1 hypothetical protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11439.42 Da        Isoelectric Point: 11.1577

>NTDB_id=317501 CFM83_RS06225 WP_016265375.1 1229603..1229908(-) (comGE) [Latilactobacillus sakei strain ZFM229]
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKITTKAGESVAINWTTD

Nucleotide


Download         Length: 306 bp        

>NTDB_id=317501 CFM83_RS06225 WP_016265375.1 1229603..1229908(-) (comGE) [Latilactobacillus sakei strain ZFM229]
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTGGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGATAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Latilactobacillus sakei subsp. sakei 23K

99.01

100

0.99

Multiple sequence alignment