Detailed information NTG0317340

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: E7Z57_RS10395
• Genome accession: NZ_CP039339
• Coordinates: 2147746..2149020 (+)
• Length: 424 a.a.
• NCBI ID: WP_020748515.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain UW386
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2142746..2154020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E7Z57_RS10370 (E7Z57_10370)	-	2142884..2143078 (+)	195	WP_064049378.1	hypothetical protein	-
E7Z57_RS10380 (E7Z57_10380)	mnmC	2143305..2145314 (+)	2010	WP_138929042.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
E7Z57_RS10385 (E7Z57_10385)	tig	2145548..2146897 (+)	1350	WP_064049380.1	trigger factor	-
E7Z57_RS10390 (E7Z57_10390)	clpP	2146927..2147580 (+)	654	WP_064049381.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
E7Z57_RS10395 (E7Z57_10395)	clpX	2147746..2149020 (+)	1275	WP_020748515.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
E7Z57_RS10400 (E7Z57_10400)	lon	2149191..2151611 (+)	2421	WP_064049382.1	endopeptidase La	-
E7Z57_RS10405 (E7Z57_10405)	-	2151785..2152057 (+)	273	WP_064049383.1	HU family DNA-binding protein	-
E7Z57_RS24735	-	2152329..2152499 (-)	171	WP_155738643.1	hypothetical protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46360.55 Da
• Isoelectric Point: 5.5599

>NTDB_id=317340 E7Z57_RS10395 WP_020748515.1 2147746..2149020(+) (clpX) [Ralstonia pseudosolanacearum strain UW386]
MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAISEKEGGLAVKSDLPTPHEIRQSLDQY
VIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGED
VENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQ
VDTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDE
AALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIALKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVID
ESTIAGDGKPLLMYEEQPKVAGSN

Nucleotide

• Length: 1275 bp

>NTDB_id=317340 E7Z57_RS10395 WP_020748515.1 2147746..2149020(+) (clpX) [Ralstonia pseudosolanacearum strain UW386]
ATGGCGGACAAGAAAGGCTCGACTGGCGAAAAGCTGCTGTACTGCTCGTTCTGCGGCAAGAGCCAGCATGAAGTCAAGAA
ACTGATTGCCGGCCCCTCGGTCTTCATCTGCGATGAATGTATCGACCTGTGCAATGAAATCATCCGGGACGAGGCCGCGA
TCTCCGAGAAAGAGGGTGGGCTGGCGGTCAAATCCGACCTGCCGACCCCGCACGAGATTCGCCAGAGCCTGGATCAATAC
GTGATCGGTCAGGAGCAGGCCAAGAAGATCCTGGCGGTCGCGGTCTATAACCATTACAAGCGCTTGAAGCACCTCGGCAA
GAAGGATGACGTCGAGCTGTCCAAGAGCAACATCCTGCTCATCGGGCCGACCGGCTCGGGCAAGACGCTGCTGGCGCAGA
CGCTGGCTCGCCTGCTGAACGTGCCGTTCGTCATCGCCGATGCCACCACGCTGACCGAAGCCGGCTACGTGGGCGAGGAT
GTCGAGAACATCATCCAGAAGCTGCTGCAGAACTGCAATTACGAGGTCGACAAGGCACAGCGTGGCATTGTCTACATCGA
TGAGATCGACAAGATTTCGCGCAAGTCCGACAACCCGTCCATCACCCGCGACGTTTCCGGGGAGGGCGTGCAGCAGGCCC
TGCTGAAACTGATCGAAGGCACAATGGCCTCGGTGCCGCCGCAGGGTGGGCGCAAGCATCCGAACCAGGATTTCCTCCAG
GTCGACACCACCAATATCCTGTTCATCTGCGGCGGTGCGTTCGATGGTCTCGAGAAGATCATCACGCAGCGCTCGGACAA
GTCCGGCATCGGCTTCGGTGCCGAGGTCAAGAGCAAGGAAGAGCGGGACGTCAACGAAGTGCTGCCGCAAGTGGAGCCGG
AAGACCTGATCAAGTTCGGCCTGATTCCCGAACTGATCGGTCGCCTGCCCGTGGTGGCGACGCTGGCCAAGCTGGACGAG
GCCGCGTTGATGGAGATCCTGGTCGAGCCGAAGAATGCAATCGTCAAGCAGTATCAGAAACTGCTGGCCATGGAAGGGGT
GGAGCTGGAAATCCGTCCGAGCGCGCTGACGGCGATTGCCCTCAAGGCGATCAAGCGCAAGACGGGGGCGCGCGGATTGC
GCTCCATCGTTGAGCACGCGCTGATGGATGTGATGTACGACCTTCCCAACCACAAGGGTGTGCAGAAGGTGGTGATCGAC
GAGAGCACGATCGCTGGCGACGGCAAGCCCTTGCTGATGTACGAAGAGCAACCCAAGGTTGCAGGTTCCAACTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-49)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.688	95.991	0.583
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.342	95.047	0.517