Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D7I46_RS03565 Genome accession   NZ_CP032627
Coordinates   732899..734170 (-) Length   423 a.a.
NCBI ID   WP_120771631.1    Uniprot ID   -
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 727899..739170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS03540 (D7I46_03540) - 728195..729067 (-) 873 WP_162930826.1 hypothetical protein -
  D7I46_RS03545 (D7I46_03545) - 729292..730278 (+) 987 WP_120773279.1 ABC transporter ATP-binding protein -
  D7I46_RS03550 (D7I46_03550) - 730346..731107 (+) 762 WP_240424523.1 ABC transporter permease -
  D7I46_RS03555 (D7I46_03555) - 731155..731939 (+) 785 Protein_695 ABC transporter permease -
  D7I46_RS03560 (D7I46_03560) - 732255..732902 (-) 648 WP_120771630.1 ComF family protein -
  D7I46_RS03565 (D7I46_03565) comFA 732899..734170 (-) 1272 WP_120771631.1 DEAD/DEAH box helicase Machinery gene
  D7I46_RS03570 (D7I46_03570) - 734303..736030 (+) 1728 WP_120771632.1 hypothetical protein -
  D7I46_RS03575 (D7I46_03575) - 736124..736759 (+) 636 WP_120771633.1 YigZ family protein -
  D7I46_RS03580 (D7I46_03580) - 736786..737277 (+) 492 WP_120771634.1 VanZ family protein -
  D7I46_RS03585 (D7I46_03585) - 737354..738379 (+) 1026 WP_120771635.1 DUF475 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 48238.05 Da        Isoelectric Point: 9.9585

>NTDB_id=317293 D7I46_RS03565 WP_120771631.1 732899..734170(-) (comFA) [Lactococcus allomyrinae strain 1JSPR-7]
MKDLYGRLLLTADFNRIRHSVSKTDFNQSPTMTAVSTDSIKCLRCGSVHKKVMVQLPLGCFYCPTCINLGRVQSDESLYH
FPQQNFIAHPYLLWSGKLTSEQQKIADSLITDCHQRSQILVRAVTGAGKTEMVYPIINQYLRDGKSVAVVSPRIDVCIEL
HKRFSRDFSCKISLLHSESQPYFRAPLVIATTHQLLRFRDAFDLLIVDEVDAFPFADNPMLYFAVENARKPDSCLVYLTA
TTTDFLEHQIKIGALHQLELTQRFHGGKLTVPKLLWHTKFIQCLKKQRVSRFPLLIFVPEIRFGESFTKKLKQKFPEEKI
AFVSSKSKQRLNIVEDFRSGNYSILVTTSILERGVTFPEIDVFVLFAHHTNFTKSALIQIAGRVGRSSTRPDGLVYFFHE
GRTRAMLKAVQEIKKSNRGGGVL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=317293 D7I46_RS03565 WP_120771631.1 732899..734170(-) (comFA) [Lactococcus allomyrinae strain 1JSPR-7]
ATGAAAGATTTATATGGACGATTATTACTAACAGCCGATTTTAATCGTATCAGACATTCTGTCAGCAAGACTGATTTTAA
CCAATCTCCTACCATGACTGCTGTCAGCACTGACAGCATTAAATGTTTGCGATGTGGCAGCGTTCACAAAAAAGTTATGG
TTCAACTTCCTCTGGGATGTTTTTATTGTCCAACTTGTATTAACTTAGGGAGAGTACAATCTGATGAATCGCTCTATCAT
TTTCCTCAGCAAAATTTTATTGCACATCCTTATCTTCTTTGGTCAGGGAAACTAACATCAGAACAGCAAAAAATCGCTGA
CAGCCTTATCACAGATTGCCATCAGCGCTCACAGATTCTTGTCAGAGCTGTCACAGGTGCAGGAAAGACAGAGATGGTCT
ACCCAATCATCAATCAATATTTAAGAGATGGAAAAAGTGTCGCAGTTGTCAGTCCTCGAATTGATGTCTGTATCGAGCTA
CATAAACGATTTTCTCGTGATTTTTCTTGTAAAATATCTCTCTTGCATAGCGAAAGTCAACCTTATTTTCGTGCACCGCT
TGTGATTGCCACCACGCATCAACTCTTACGATTTCGTGATGCTTTTGATTTATTGATTGTTGACGAAGTTGATGCCTTTC
CTTTTGCAGATAATCCAATGCTTTATTTCGCTGTAGAAAATGCAAGAAAACCTGATTCTTGTTTGGTTTACCTGACTGCC
ACAACCACCGACTTCTTAGAGCATCAAATCAAAATCGGAGCTCTCCATCAACTTGAATTAACCCAACGTTTTCATGGAGG
TAAACTCACAGTTCCAAAACTTTTATGGCATACAAAATTTATCCAATGTTTAAAAAAGCAGAGAGTAAGCCGTTTTCCAC
TTCTTATTTTTGTACCTGAGATTAGATTTGGAGAATCATTTACAAAAAAGTTAAAACAAAAATTTCCAGAAGAAAAAATT
GCATTTGTATCCTCCAAAAGCAAGCAGCGCTTAAATATAGTTGAAGACTTTCGTTCAGGAAACTACTCTATCCTTGTTAC
CACAAGTATTTTAGAGCGAGGAGTTACTTTCCCAGAAATAGACGTATTTGTCCTCTTCGCTCATCACACTAATTTTACAA
AATCAGCCCTTATCCAAATAGCAGGACGAGTTGGACGCTCAAGCACACGCCCTGATGGATTAGTCTACTTTTTTCACGAA
GGACGAACTAGAGCCATGCTTAAAGCCGTTCAGGAAATCAAAAAATCAAACCGTGGAGGTGGTGTTTTATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(280-387)

Type III restriction enzyme, res subunit (ResIII)

(97-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

59.231

92.199

0.546
  comFA/cflA Streptococcus mitis SK321

50.508

93.144

0.47
  comFA/cflA Streptococcus mitis NCTC 12261

50

93.144

0.466
  comFA/cflA Streptococcus pneumoniae TIGR4

49.746

93.144

0.463
  comFA/cflA Streptococcus pneumoniae D39

49.746

93.144

0.463
  comFA/cflA Streptococcus pneumoniae Rx1

49.746

93.144

0.463
  comFA/cflA Streptococcus pneumoniae R6

49.746

93.144

0.463
  comFA Bacillus subtilis subsp. subtilis str. 168

37.108

98.109

0.364

Multiple sequence alignment