Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   D7D53_RS07750 Genome accession   NZ_CP032621
Coordinates   1546526..1548490 (-) Length   654 a.a.
NCBI ID   WP_120770631.1    Uniprot ID   -
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541526..1553490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS07710 (D7D53_07710) - 1541790..1542320 (-) 531 WP_000096318.1 hypothetical protein -
  D7D53_RS07715 (D7D53_07715) - 1542324..1543052 (-) 729 WP_000006496.1 hypothetical protein -
  D7D53_RS07720 (D7D53_07720) - 1543069..1543464 (-) 396 WP_049509646.1 hypothetical protein -
  D7D53_RS07725 (D7D53_07725) - 1543611..1543943 (+) 333 WP_120770628.1 helix-turn-helix domain-containing protein -
  D7D53_RS07730 (D7D53_07730) - 1544021..1545205 (-) 1185 WP_120770629.1 hypothetical protein -
  D7D53_RS07735 (D7D53_07735) - 1545198..1545569 (-) 372 WP_120770630.1 hypothetical protein -
  D7D53_RS07750 (D7D53_07750) amiA 1546526..1548490 (-) 1965 WP_120770631.1 peptide ABC transporter substrate-binding protein Regulator
  D7D53_RS07755 (D7D53_07755) rpmH 1548629..1548763 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  D7D53_RS07760 (D7D53_07760) - 1548908..1550122 (-) 1215 WP_120770632.1 pyridoxal phosphate-dependent aminotransferase -
  D7D53_RS07765 (D7D53_07765) - 1550279..1550578 (-) 300 WP_120770873.1 hypothetical protein -
  D7D53_RS07770 (D7D53_07770) - 1550743..1551195 (+) 453 WP_120770633.1 universal stress protein -
  D7D53_RS07775 (D7D53_07775) - 1551230..1552618 (-) 1389 WP_120770634.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73057.13 Da        Isoelectric Point: 4.7077

>NTDB_id=317209 D7D53_RS07750 WP_120770631.1 1546526..1548490(-) (amiA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MKKSKVMLFGAMALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKSSDFGTVGV
KAVDDYTLQYTLNQPETYWNSKTTASILSPVNEAFLKSQGDDFGSVTPSSILSNGPYLFKSFTSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTITPSNFVQVGDKNFGDIVNEKIVNYGKDWTNINL
NDGKQAFLNPDKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKDNVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKDKIGLADYKKLLDQADAEITDTQA
RYEKYAEAQAWLTDSALFLPVQSGGANPIFRKTVPFTGPFSFVGHKGNADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=317209 D7D53_RS07750 WP_120770631.1 1546526..1548490(-) (amiA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGCGGGTCATCCCA
ATCAAGCAATGCAGACAAGACATACTCTTATATCTTTGTCAGCAACCCTGATACCTTGGATTATATTACCTCTACACGAG
ATTCTACATCTAGTATCACAACCAACTTGATTGATGGTTTGTTGGAAAATGACCAGTATGGCAATCTCATCCCATCTATG
GCTGAGTCATGGACAGTGTCAAAAGATGGCTTGACTTACACTTATAAGATCCGTCAGGGAGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCGGACGTAACCGCTCATGACTTTGTGACAGGACTTAAGTATGCGGCTGATAAAAAAGCTGAAAACT
TGTACTTGGTACAAGACTCTATCAAGGGGCTAGCAGATTATGTTGAAGGGAAATCATCTGATTTTGGAACTGTTGGTGTT
AAGGCGGTGGATGATTACACACTACAATACACCCTCAACCAACCTGAGACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAGTCCTGTAAATGAAGCCTTCTTGAAGTCTCAGGGAGATGACTTTGGAAGTGTGACACCATCAAGTATTTTGTCAA
ATGGTCCTTACTTGTTTAAATCCTTCACATCAAAATCTTTGATTGAATTTGATAAAAACCCTAATTACTGGGATAAGGAT
AATGTTAAAATCGAGAAAGTGAAACTCTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACAGATGGTCGTATCTTCCCAACAAGTTCAGTCTTTGCTGAACTCAAGAAGGGGAATGAGGACAAGATTACCT
ACACACCGCAAAACTCAGTTACTTTCTATTATCTTTTCAACGTGAATCGTCAAAGCTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACAGATTCACGCGCAGCTATGCAAAATAAGGATTTCCGTCAGGCTATCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCACAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAATACGATTACACCAAGTAACTTTGTCC
AAGTTGGCGATAAGAACTTCGGTGACATTGTCAATGAAAAAATTGTCAACTACGGTAAAGATTGGACAAATATTAACCTA
AACGATGGTAAGCAAGCCTTCTTGAACCCTGACAAGGCCAAAGAGAAGTTTGCCAAGGCCAAAGAAAGTCTGCAAGCACA
GGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAATTAGATGTGCAACAGGCCGGATCTTTCA
AACAAACAGTGGAAGAAACCCTTGGTAAGGATAATGTGGTTATCGATGTTATCCAACTATCTCCGGATGAAAAAGACCAG
GCAACCTACTTTGCAGATACAGCAGAACAAAAAGACTACGATATTGACATCTCAGGATGGGGTGGAGATTACTCAGATCC
GAAGACTTACCTAGCCATCCTTGATCCAGAGACAGGTTCTCAGTTGAAAAACATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTCAAGGACAAGATTGGTCTTGCTGACTACAAGAAACTCTTGGATCAGGCTGATGCGGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGAAGCCCAGGCTTGGTTGACAGATAGCGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCTAA
CCCAATCTTCCGTAAGACTGTACCGTTTACAGGTCCATTCTCATTCGTTGGTCATAAGGGAAATGCAGACAACTATAAAT
ATGTTGAACTGCAAAAAGAACCAGTAACTGCTAAACAGTACCAAGAGCTTTATGAAAAATGGCTAAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCATATTCAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.711

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.407

100

0.547

Multiple sequence alignment