Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   D7D53_RS05720 Genome accession   NZ_CP032621
Coordinates   1156404..1158362 (-) Length   652 a.a.
NCBI ID   WP_120770402.1    Uniprot ID   -
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151404..1163362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS05710 (D7D53_05710) - 1153994..1155160 (-) 1167 WP_120770400.1 MalY/PatB family protein -
  D7D53_RS05715 (D7D53_05715) - 1155168..1156262 (-) 1095 WP_120770401.1 cystathionine gamma-synthase -
  D7D53_RS05720 (D7D53_05720) amiA 1156404..1158362 (-) 1959 WP_120770402.1 peptide ABC transporter substrate-binding protein Regulator
  D7D53_RS05725 (D7D53_05725) - 1158567..1160189 (-) 1623 WP_120770403.1 putative polysaccharide biosynthesis protein -
  D7D53_RS05730 (D7D53_05730) - 1160295..1161740 (+) 1446 WP_120770404.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  D7D53_RS05735 (D7D53_05735) - 1161787..1161978 (-) 192 WP_049488510.1 CsbD family protein -
  D7D53_RS05740 (D7D53_05740) - 1162080..1162730 (-) 651 WP_120770405.1 DUF1803 domain-containing protein -
  D7D53_RS05745 (D7D53_05745) - 1162714..1163226 (-) 513 WP_120770406.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72680.11 Da        Isoelectric Point: 4.9050

>NTDB_id=317193 D7D53_RS05720 WP_120770402.1 1156404..1158362(-) (amiA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MKKSKAKYATLAGVVLSAGILLSACGNSSTASKTYNYVYVSDPSSLNYLAENRATTNDIVVNLVDGLMENDQYGNYIPSL
AEDWSVSKDGLTYTYKLRKDAKWYTADGDEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYITGKTTDFSTVGV
KALDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDAK
NVFVDDVKLAYYDGSDQDALARNFVEGAYSYARLYPNSSSFEGIKEKNKDNIIYSLQDATSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSINGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNAEKAKAKFAEAKKELQAKGVQFPIHLDMTVDQAAKKGVQEANSMKQSIEAALGAENVVIDIQQLTTEDYDN
TSYLAQTAAQKDYDLYNGGWGPDYQDPSTYLDVFNVNSGGLMQNLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDLAKR
YEKYADIQAWLVDSALAIPNVSKGGTPVLRKTVPFSEPYSLAGNKGIESYKYLKVQDKTVTKEEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=317193 D7D53_RS05720 WP_120770402.1 1156404..1158362(-) (amiA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGAAAAAGTCTAAAGCCAAGTATGCAACGCTTGCAGGTGTCGTATTAAGTGCAGGTATTTTATTAAGCGCGTGTGGAAA
TTCCAGCACAGCGTCAAAAACATATAACTATGTTTATGTTAGTGATCCGTCTAGTTTGAATTATCTAGCAGAAAACCGTG
CAACAACTAATGATATCGTGGTTAATTTGGTAGATGGGCTCATGGAAAATGACCAGTATGGGAACTATATTCCATCCTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTGCGTAAAGATGCTAAATGGTATACTGCAGA
TGGAGATGAATATGCTCCTGTAACTGCCCAAGATTTTGTAACTGGTTTGAAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTACTTAGTACAAGAATCCGTCGCTGGTTTGGATGACTATATCACTGGTAAAACAACAGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGACCAAACGGTTCAATATACCTTGACACGACCAGAATCTTACTGGAACTCAAAAACAACGTCAACTAT
TCTCTTCCCTGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGCATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCTGTCATCGAATTCAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTGGCTCGTAACTTTGTAGAAGG
TGCTTATAGCTATGCTCGTCTTTATCCAAATAGTTCAAGTTTTGAAGGAATTAAAGAAAAGAATAAGGACAATATCATCT
ATAGCTTGCAAGATGCTACTTCTTACTTCTTAAACTTTAACCTAGATAGAAAATCTTATAAATTCACTTCAAAAACAAGT
GATGCTGAGAAGAAATCGACTCAAGAAGCGGTTCTTAACAAAAACTTCCGTCAAGCCATCAACTTTGCATATGATCGTAC
AGCTTACGGGGCTCAATCTCAAGGAGAAGATGGTGCAACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAAACTTTGTAA
GTATCAACGGAAAAGACTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGAATCAACTTT
GCGGATGCCCAAGATCCATACTACAATGCTGAAAAAGCCAAAGCCAAATTTGCTGAAGCTAAGAAAGAACTCCAAGCCAA
AGGAGTTCAATTCCCTATCCACCTGGACATGACAGTTGACCAAGCTGCTAAAAAGGGTGTCCAAGAGGCAAACTCTATGA
AGCAATCTATTGAGGCAGCTTTAGGTGCAGAAAATGTCGTAATTGATATTCAACAACTCACTACTGAAGATTATGATAAT
ACAAGCTATTTGGCTCAGACAGCAGCTCAGAAGGATTATGATCTTTACAACGGTGGTTGGGGTCCTGATTACCAAGATCC
TTCAACCTATCTTGATGTCTTTAATGTTAATTCTGGTGGTCTGATGCAAAATCTAGGTTTAGAGCCAGGTGAAGCCAATG
ACAAGGCCAAGGCTGTTGGACTAGATGTCTACACTCAAATGTTGGAAGAAGCCAATAAGGAACAAGATCTTGCAAAACGC
TATGAAAAGTATGCTGATATCCAAGCGTGGTTGGTAGATAGCGCTTTAGCAATTCCAAATGTGTCTAAGGGTGGAACACC
AGTATTGAGAAAGACAGTTCCTTTCTCAGAACCATATTCATTAGCTGGTAATAAAGGTATTGAATCATATAAATACCTCA
AAGTACAAGATAAGACAGTCACAAAAGAAGAATATGAAAAAGCCAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.599

100

0.581
  amiA3 Streptococcus thermophilus LMG 18311

56.297

100

0.569
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.567

Multiple sequence alignment