Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   D7D53_RS02870 Genome accession   NZ_CP032621
Coordinates   585794..587761 (+) Length   655 a.a.
NCBI ID   WP_000837408.1    Uniprot ID   F9HCK4
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 580794..592761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS02855 (D7D53_02855) - 581356..582090 (+) 735 WP_120770065.1 CPBP family intramembrane glutamic endopeptidase -
  D7D53_RS02860 (D7D53_02860) parC 582143..584614 (+) 2472 WP_120770066.1 DNA topoisomerase IV subunit A -
  D7D53_RS02865 (D7D53_02865) - 584749..585771 (+) 1023 WP_120770067.1 branched-chain amino acid aminotransferase -
  D7D53_RS02870 (D7D53_02870) amiA3 585794..587761 (+) 1968 WP_000837408.1 peptide ABC transporter substrate-binding protein Regulator
  D7D53_RS02875 (D7D53_02875) - 587860..588090 (+) 231 WP_000037110.1 DUF2969 domain-containing protein -
  D7D53_RS02890 (D7D53_02890) rpsA 588463..589665 (+) 1203 WP_001001631.1 30S ribosomal protein S1 -
  D7D53_RS02895 (D7D53_02895) - 589751..590248 (+) 498 WP_120770068.1 GAF domain-containing protein -
  D7D53_RS02900 (D7D53_02900) dnaX 590248..591903 (+) 1656 WP_120770069.1 DNA polymerase III subunit gamma/tau -
  D7D53_RS02905 (D7D53_02905) - 591931..592125 (+) 195 WP_001081602.1 DUF3272 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72716.34 Da        Isoelectric Point: 5.1322

>NTDB_id=317179 D7D53_RS02870 WP_000837408.1 585794..587761(+) (amiA3) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=317179 D7D53_RS02870 WP_000837408.1 585794..587761(+) (amiA3) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGTACAACAGCTCTATTAGTGGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCAGCATCTTTGGACTATAGTATAGCGACTC
GTACATCTACAACAGATGTCATCGGGAACGTGGTTGATGGTTTGATGGAAAACGACCAATACGGAAATGTTATTCCTTCC
TTGGCTGAAGATTGGTCTGTGTCAAAAGATGGTTTGACTTATACCTATAAACTTCGTAAAGGAGTTAAATGGTACACTTC
AGAAGGTGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTGACAGGACTAAAACACGTAGCTGACGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATCAAGGGCTTGGATGCCTACATGACTGGTGAGACCAATGATTTCTCTACAGTTGGT
GTCAAGGCCTTGGACGATTACACAGTTGAATATACCCTAAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACCACAGC
AACGATGTTACCTGTAAATGAAGAATTTTTGAAGGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCGGGAATTCTCT
ATAATGGTCCTTATATCTTGAAGACCTTGACTTCCAAATCGTTGATTGAATACGAGAAAAATCCAAATTATTGGGATAAA
GAAAAGGTAAAAATCGAGAAGATTAAATTGACTTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGTTTCTCTTC
AGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCAACTTTGGAACAATACGGAGATAAAATCA
CTTATAGTCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATATAATAAAACTGCGAAAACA
AGTGAAGAACAAAAGACTTCTACAAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
TCATTCTTATGCTGCCCAGCTAAATGGCGAAGACGGTGCGGATAAGATTATTCGTAACAGCCTTGTTCCTGACAACTTTG
TACAAGCAGGTGGTAAAAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGCTGCGTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACCTTCCCAATTCATTTGGATGTCCCAGTTGAACAAACAGATACCATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGACGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCACAAGCACGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGTTATCAAGA
CCCAGCATCTTACTTGAATATCATGGATCCTAAATCAGGTTCTGCTATGAAACACCTTGGTATTACTAAAGGGAAAGATA
AGGATGTTGTAGCGAAACTTGGTTTGGACCAGTATAAGAAATTATTGGATGATGCCGATTCAGAAACTACTAATCTTGAA
GAGCGCTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCCTCATCTGGTGG
TTCACCAGTTGTAAGTAATGTCGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGTGACCCATATATCTTTA
AAGGAATGAAATTACAAAAAGATATCGTTACGACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAATGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HCK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.879

100

0.533
  amiA Streptococcus salivarius strain HSISS4

52.432

100

0.527
  amiA3 Streptococcus thermophilus LMG 18311

52.273

100

0.527

Multiple sequence alignment